| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3428 |
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| Symbol | alaS |
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| ID | 1171103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 3569751 |
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| End bp | 3572375 |
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| Gene Length | 2625 bp |
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| Protein Length | 874 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637345237 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | NP_718981 |
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| Protein GI | 24374938 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATCAAA CGACAGCAGC GCTTAGAAGT GCTTTCCTCG AATTTTTCCG CAGCAATGGT
CACCAAGTTG TGGACAGTAG TTCTCTTGTA CCAGGCAACG ATCCCACGCT CTTATTCACC
AACGCCGGTA TGAACCAGTT CAAGGACGTG TTTCTTGGCA TGGACAAACG TAGCTATACA
CGTGCGACCA CTGCCCAACG CTGCGTCCGT GCGGGTGGTA AACACAACGA CTTAGATAAT
GTGGGTTATA CCGCACGTCA CCACACTTTT TTCGAAATGC TGGGTAACTT CAGTTTTGGT
GATTATTTCA AAGAAGATGC GATTCGTTTT GGTTGGACAT TCCTGACCGA AGTATTGATG
CTACCAAAGG AACGTCTGTG CGTAACTATT TACCAAACAG ACGATGAAGC CTTTGAAATC
TGGAATAAAA AAATAGGCGT TGCCGCTGAG AATATCATCC GTATCGGTGA TAACAAGGGC
GCGCCATATG CTTCAGATAA CTTCTGGCAA ATGGGCGACA CCGGTCCTTG TGGTCCTTGT
ACCGAAATTT TCTATGACCA CGGCGACCAC ATTTGGGGCG GACGTCCAGG CAGCCCTGAA
GAAGATGGCG ATCGTTTCAT CGAAATTTGG AACATTGTAT TCATGCAATA CAATCGCCAA
GCCTCTGGCG AAATGTTGCC GCTACCAAAA CCATCGGTTG ATACCGGTAT GGGTATCGAG
CGTATTGCCG CGATTATGCA AGGTGTTCAT TCAAACTACG AAATCGATAT TTTCCGCGCT
TTGATTGCTA AAGCGGCTGA AATCATCGGT GTGGCTGACT TATCTAACAA GTCACTGCGC
GTGATTGCCG ACCATATCCG TTCATGTGCC TTCTTAGTTG CCGATGGTGT GATGCCATCG
AACGAAGGTC GTGGCTATGT ACTGCGCCGT ATTATTCGCC GCGCCGTTCG TCATGGTAAC
AAGTTAGGTG CAACCGAAGC CTTCTTCTAC AAGTTGGTTC CGACGCTGAT CGATGTGATG
GGTGATGCGG CTAAAGGCCT GGCTGAAACT CAAGTTATTG TTGAAAAAGC CCTTAAAGCG
GAAGAAGAAC AGTTTGCCCG TACATTAGAG CGTGGTTTAG GCATTCTGGA TAGCGCATTG
AACGAATTAC AAGGTGACAC CTTAGACGGT GAAACAGTCT TTAAACTGTA CGATACCTAC
GGCTTCCCTG TGGATTTAAC TGCTGACGTG TGTCGTGAGC GTAACATTAT TGTCGATGAA
GCTGGTTTTG AAGCTGCGAT GGCTGAACAA CGCAGTCGCG CGCAAGCCGC GGGTAACTTT
GGTGCCGATT ATAACGCAGC ACTTAAGATC GATGCTGAAA CCGCATTCTG TGGTTACTCA
GAACTTACTG GCAATGCCAA AGTCACTGCA CTGTACCTAA ATGGCGAGTC AGTGCCTGCG
ATCAACACTG GCGATGACGC TGTCGTTGTG CTCGATGTAA CCCCTTTCTA TGCTGAATCG
GGCGGCCAAG TGGGTGACAA GGGCGTATTA ATGGCTCAAG GCATTGAGTT TACGGTTAAC
GATACGCAAA AGTTTGGTCA AGCTTCAGGT CACAAAGGAA CCTTAACGGC TGGCAGTTTA
AGTGTTGGCC AAGTGCTTGA AGCCAAAGTG GATAAAAAGC TACGTCACCG CACTCAGTTA
AACCACTCTG TAACTCACTT ATTGCATGCT GCACTGCGCC AAGTGTTGGG CACTCATGTT
ACTCAAAAAG GCTCATTGGT TGACCCAGAG CGTTTACGCT TTGACTTCTC CCATTTCGAA
GCGGTAAAAC CTTTCGAACT TAAGCAGGTT GAAGAGTTAG TCAATACGCA AATTCGTCGT
AACCATGAGC TTAAAGTGGC TGAAATGGCG ATTGATGAAG CCAAAGAAAA AGGCGCTATG
GCGCTCTTTG GTGAAAAATA TGATTCACAG GTTCGTGTCG TGACCATGGG CGATTTCTCA
ATCGAACTTT GTGGTGGTAC GCATGTTGGC CGCACTGGTG ATATTGGTTT ATTTAAGATC
ACTTCAGAAG GTGGTATAGC CGCAGGTGTA CGCCGTATTG AAGCGGTTAC AGGTGCTGCG
GCTATGGCAT ATGTGGCGCA GCAACAGGCT GAGCTTGAGG AAGCCGCATC ACTTCTGAAA
GCTGATGCTC ATTCAGTTGT TACCAAACTG AAAGTCCAAT TAGATAAAAT GAAGCAACTT
GAGAAAGAAA TGCAGCAACT TAAAGATAAG TTAGCGGCTG CAGCAAGTGC GGATTTAGCG
GGTGATGCGG TAGTGGTTAA TGGCGTCAAT GTGCTGATTA AAAAGCTAGA AGGCGTTGAA
GCTGGTGCGT TACGCGGTCT GCAAGATGAG CTTAAACAAA AGCTTAAATC CGCTATTATC
GTGTTAGGTG TAGCACAAGA AGGTAAAGTC AACCTTATTG CAGGTGTTAG CAACGACTTA
ATCGCTAAAA TCAAAGCGGG TGAGCTGGTT GCTATGGTCG CCACACAAGT CGGTGGTAAA
GGTGGTGGTC GCCCTGATAT GGCCCAAGCA GGTGGTAGCC AACCAGAAAA TCTGGATGCG
GCACTGTCAC AAGTATTACC TTGGATTACT GAGCGTTTAG CTTAA
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| Protein sequence | MYQTTAALRS AFLEFFRSNG HQVVDSSSLV PGNDPTLLFT NAGMNQFKDV FLGMDKRSYT
RATTAQRCVR AGGKHNDLDN VGYTARHHTF FEMLGNFSFG DYFKEDAIRF GWTFLTEVLM
LPKERLCVTI YQTDDEAFEI WNKKIGVAAE NIIRIGDNKG APYASDNFWQ MGDTGPCGPC
TEIFYDHGDH IWGGRPGSPE EDGDRFIEIW NIVFMQYNRQ ASGEMLPLPK PSVDTGMGIE
RIAAIMQGVH SNYEIDIFRA LIAKAAEIIG VADLSNKSLR VIADHIRSCA FLVADGVMPS
NEGRGYVLRR IIRRAVRHGN KLGATEAFFY KLVPTLIDVM GDAAKGLAET QVIVEKALKA
EEEQFARTLE RGLGILDSAL NELQGDTLDG ETVFKLYDTY GFPVDLTADV CRERNIIVDE
AGFEAAMAEQ RSRAQAAGNF GADYNAALKI DAETAFCGYS ELTGNAKVTA LYLNGESVPA
INTGDDAVVV LDVTPFYAES GGQVGDKGVL MAQGIEFTVN DTQKFGQASG HKGTLTAGSL
SVGQVLEAKV DKKLRHRTQL NHSVTHLLHA ALRQVLGTHV TQKGSLVDPE RLRFDFSHFE
AVKPFELKQV EELVNTQIRR NHELKVAEMA IDEAKEKGAM ALFGEKYDSQ VRVVTMGDFS
IELCGGTHVG RTGDIGLFKI TSEGGIAAGV RRIEAVTGAA AMAYVAQQQA ELEEAASLLK
ADAHSVVTKL KVQLDKMKQL EKEMQQLKDK LAAAASADLA GDAVVVNGVN VLIKKLEGVE
AGALRGLQDE LKQKLKSAII VLGVAQEGKV NLIAGVSNDL IAKIKAGELV AMVATQVGGK
GGGRPDMAQA GGSQPENLDA ALSQVLPWIT ERLA
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