Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3160 |
Symbol | rfbC |
ID | 1170854 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 3297547 |
End bp | 3298086 |
Gene Length | 540 bp |
Protein Length | 179 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637344977 |
Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
Protein accession | NP_718716 |
Protein GI | 24374673 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAGTGCA TTGAAACCGA GCTGGCTGAA GTACTTATCT TTGAACCTAA GGTATTTGGC GATGAGCGTG GTTTTTTTAT GGAAACCTTT CGGCAAGCGT ATTTTACTGA GTGCTTGCTG AGTCGCGGAT TTGAAGCCCC TGCGTTAGTA CAAGATAACT ACAGTCGCTC GCAGCAGCAT GTGTTGCGTG GATTGCATTA TCAACTCCGG CATCCGCAGG GCAAATTGGT CCGCGTATGT GCCGGCAGTA TTTTTGATGT TGCCGTCGAT ATTCGGCCGC AATCTGCGAC CTATGGAAAA TGGGTTGGCA GGATTCTTTC TGCTGATAAC CATTTACAAA TGTGGATCCC GCCAGGATTT GCCCATGGGT TTTATGTGTT GAGTGAATAC GCTGATGTGC TGTATCGCTG CAGCGATTAT TATGCGCCGA ATGATGAATA TGTGTTGCCT TGGAATAGTG TGCAGTTTGC AATTGACTGG CCGCTGTTAA ATGAAACACC CATTCTTTCC GCAAGGGATG CAAACGCCGT TAGCGCCTAA
|
Protein sequence | MKCIETELAE VLIFEPKVFG DERGFFMETF RQAYFTECLL SRGFEAPALV QDNYSRSQQH VLRGLHYQLR HPQGKLVRVC AGSIFDVAVD IRPQSATYGK WVGRILSADN HLQMWIPPGF AHGFYVLSEY ADVLYRCSDY YAPNDEYVLP WNSVQFAIDW PLLNETPILS ARDANAVSA
|
| |