Gene SO_3089 details

Gene Information

• Locus tag: SO_3089
• Symbol: fadI
• ID: 1170774
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 3212814
• End bp: 3214124
• Gene Length: 1311 bp
• Protein Length: 436 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 637344891
• Product: 3-ketoacyl-CoA thiolase
• Protein accession: NP_718652
• Protein GI: 24374609
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0183] Acetyl-CoA acetyltransferase
• TIGRFAM ID: [TIGR01930] acetyl-CoA acetyltransferases; [TIGR02446] fatty oxidation complex, beta subunit FadI

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGATA GACAACAGGT AACTAACGCA AGGGGTGAGC GTATCGCCAT TGTGGCAGGC 
TTAAGAACGC CATTTGCGAA ACAGGCGACC GCATTCCACG GTATTTCGGC CCTTGATATG 
GGCAAAATGG TGGTTAACGA ACTGCTTGTT CGTAGCGAAC TGGATCCGAA ATTGATTGAG 
CAACTGGTAT ATGGTCAAGT AGTGCAAATG CCTGCTGCGC CTAACATTGC CCGTGAAATC 
GTATTAGGAA CGGGTATGGA TGTATCAACC GATGCCTATA GCGTGACCCG CGCCTGTGCG 
ACCAGTTTTC AATCTGCGGT GAATGTGGCT GAGTCAATCA TGACGGGGAA TATTGAGATC 
GGTATTGCCG GCGGCGCTGA CTCCTCTTCT GTATTACCTA TTGGTGTGTC TAAAAAACTT 
GCTCATGCTT TAGTCGATCT GAACAAAGCC CGTACTTTTG GTCAAAAATT ACAGATTTTT 
CGCCGTTTAG GCATTAAAGA TTTATTGCCT GTGCCGCCTG CCGTGGCCGA GTATTCAACG 
GGGTTGTCAA TGGGACAAAC CGCTGAACAA ATGGCGAAGA CTTACAACAT CAGCCGCGCC 
GACCAAGATG CGCTGGCGCA TCGCTCTCAT ACCTTAGCGA ATGAAACCTG GGCTTCGGGC 
CATCTACGTG ATGAAGTGAT GGTGGCCCAT GTCCCACCCT ACAAACAGTT TATCGAGCGC 
GATAACAATA TTCGTGAAAA CTCCGATTTA GCCTCTTACG CCAAACTGCG TCCGGCTTTC 
GATAAAAAGC ATGGTAGCGT GACTGCCGCG AACAGTACGC CGCTGACCGA TGGCGCCTCG 
GCGATCATTC TGATGAGTGA AGGCCGCGCT AAAGCTCTTG GTTATCAACC AATTGGTTAC 
ATTAAGAGCT ACGCATTTAC CGCCATTGAT GTTTGGCAAG ATATGCTAAT GGGCCCATCT 
TATGCGACGC CATTGGCATT AAAACGTGCT GGCATGGAAT TAGAGGATTT AACCCTAATC 
GAAATGCACG AAGCTTTTGC AGCGCAAACC CTAGCCAATA TGCAGATGTT TGCATCCAAA 
AAATTTGCCG AAGAAAAACT TGGCCGCAAC CGCGCCATTG GCGACATCGA TATGAGCAAA 
TTCAACGTAC TCGGCGGCTC TTTAGCCTAT GGCCATCCTT TTGCAGCCAC AGGTACGCGT 
TTAATCACTC AGGTTTGTCG TGAGCTTAAA CGTCGTGGCG GCGGAACGGG TCTAGCAACG 
GCCTGTGCTG CGGGTGGTTT AGGGGCTGCA ATGATTGTGG AAGTGGAGTA A 

 

Protein sequence

MSDRQQVTNA RGERIAIVAG LRTPFAKQAT AFHGISALDM GKMVVNELLV RSELDPKLIE 
QLVYGQVVQM PAAPNIAREI VLGTGMDVST DAYSVTRACA TSFQSAVNVA ESIMTGNIEI 
GIAGGADSSS VLPIGVSKKL AHALVDLNKA RTFGQKLQIF RRLGIKDLLP VPPAVAEYST 
GLSMGQTAEQ MAKTYNISRA DQDALAHRSH TLANETWASG HLRDEVMVAH VPPYKQFIER 
DNNIRENSDL ASYAKLRPAF DKKHGSVTAA NSTPLTDGAS AIILMSEGRA KALGYQPIGY 
IKSYAFTAID VWQDMLMGPS YATPLALKRA GMELEDLTLI EMHEAFAAQT LANMQMFASK 
KFAEEKLGRN RAIGDIDMSK FNVLGGSLAY GHPFAATGTR LITQVCRELK RRGGGTGLAT 
ACAAGGLGAA MIVEVE