Gene SO_2504 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_2504 
Symbol 
ID1170216 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp2628675 
End bp2629289 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content48% 
IMG OID637344335 
Producthypothetical protein 
Protein accessionNP_718091 
Protein GI24374048 
COG category[R] General function prediction only 
COG ID[COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAAACTGT TGACGTTAAA TAAATTCGGC CCCTATTGGC TGGCGTTTAT CGTCAGTGTG 
CTCTGCGCGC TCTTGTATGT AGCGGGACTT TTTACCCCAA GCATAGATAC TCTGCTTGCC 
TATCGTCGTA GCGACATTGG TGATGGACAG TGGTGGCGTC TAGTCACAGG TAACCTGCTA 
CATACCAATC ATTGGCATTT GCTGATGAAC CTCGCTGGAT TATGGGTAGT GCTATTTTTG 
CACCACTTCC ATTATCAGCC TAGGGGATTA ACCGTACTCT TTATCCTACT TTGCCTGTTT 
GAAGGCATTG GTCTGTATCT GGGCTATCCA CAATTATTAG GCTATGTGGG GCTGAGCGGC 
ATGTTACATG GCCTATTTGC CTATGGCGCA GTGCAGGATA TTCGCCGCAA AATGCGCTCG 
GGTTATCTGC TACTGCTCGG GGTAATCATC AAAGTTGGCC ATGAACAATT CTATGGCGCA 
AGTGACGATG TAACCGCAAT GATCGGTGCG CGGGTCGCCA CCGAAGCGCA CTTAGTTGGT 
TTGATCTGCG GATTAGTGTG CGCGCTATTA TTCTTTGTAT TCCAACGCTT GATACTAACC 
AAAGCCAAAG CGTAA
 
Protein sequence
MKLLTLNKFG PYWLAFIVSV LCALLYVAGL FTPSIDTLLA YRRSDIGDGQ WWRLVTGNLL 
HTNHWHLLMN LAGLWVVLFL HHFHYQPRGL TVLFILLCLF EGIGLYLGYP QLLGYVGLSG 
MLHGLFAYGA VQDIRRKMRS GYLLLLGVII KVGHEQFYGA SDDVTAMIGA RVATEAHLVG 
LICGLVCALL FFVFQRLILT KAKA