| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2148 |
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| Symbol | recB |
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| ID | 1169889 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 2255679 |
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| End bp | 2259458 |
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| Gene Length | 3780 bp |
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| Protein Length | 1259 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637344010 |
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| Product | exodeoxyribonuclease V, beta subunit |
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| Protein accession | NP_717749 |
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| Protein GI | 24373706 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATACTTC CTACTACATC ACAGGCGCTG CCGTTAGATC CGCTCACCCT GCCATTTGGT
GGTAGCCGAT TGATAGAGGC CAGTGCGGGC ACAGGTAAAA CCTATACGAT TTCGGGCTTG
TATCTGCGAC TACTGCTTGG GGATGGCTTA AGCGAACCAC TGAGTTGCGA ACAAATTCTG
GTAGTAACCT TCACCAATGC CGCCACAGAG GAATTAAGGG ACAGGATCCG CCGCCGTATA
CAAGTGGCTT TTAAGTGTTT CTTGGGGCTC GAAATTAACG ATCCCTTTGT ACAGGCGTTG
TACGATAAAA CCCCAGAATC TGAGCGCGCC ATCGCCCTAA GACGCTTCGA CTTGGCGCTC
AAATCCCTCG ACGAAGCGGC CATTTTTACT ATTCACGGTT TTTGCCAACG GATCTTAGCC
GATCTCGCCT TCGAATCCTC TTTACTGTTC GAGTCAGATT TTACCTTAGA CGACAGCGAG
TTTTTGCACC ATGCAGTGCG CGACTTTTGG CGTGAAGCCT GCTATCCGCT GCCGGAATAT
TTAGCCCAGA TTATTGCCAG CGAATTTGGC GATCCCGATG GCTTAGTCAA GCAGCTTCGG
GCCTTGCTCG GTGCTAGTGA AGCAAAACCG CTTAAACCCG TGCAGCCCTT TGCTCGTTTG
GCAGAATCCT TAAGCCAGAG TGTGCAGCGC TTTAAACTCG CCTGGCCGCG TGGCCGCGAC
GCGCTGTTAG CGTTACTTCA TAGCCTGCCG CTTAATGGCC AGCGCTTTGG TAAAGCGAGC
GACAATTACC CCAAACTGGC GGAAATGTTC GACCAACTGG ACAACTTTAT CGCCTTTGGT
CATGGCTTAC CGCCGCTAAA AGTGCTTGAG GCCTTGTCAC TCTCAGAACT TAAGCTCAAT
AAAGGCGGTG TACTCCCAAG CGTGAGCGAG GCGCCACTGC TTGACCATAT GGAGCAATTA
GCCACGCTGA TTAACGCCAT TAAACCCGCG TTTTTATTCA GTGCTAAGCA AGGGATCAGC
GAGCGGTTTG CTAAGCAAAA ACAGCTTAAA AATGTGCTAA CACCGGATGA TTTGCTTACC
ACCTTAGCTG CTGCGATGCT GGCCAATCCT GATACTTTGC CTAAAGCGGT GGCAAGTCGC
TTCCCTGTGG CCTTAATCGA TGAATTCCAA GATACCGATC CTTTGCAATT TGCGATTTTC
TCGTGGATTT ATCAAACCCG TTTGGGGGTT AAAGCGCAAA ATTCGACAGC TGTCGAACCC
AAGGCTCGCA CGGATAGCAA ATTAAGCCTG CTGATGATTG GTGACCCCAA ACAGGCGATT
TATGCTTTCC GCGGCGCCGA TATTTACACT TATATTGAGG CGCGCAGGCA AACCCAAGCG
CACTATTTTC TCGACACTAA CTATCGCTCG AGTCGTAATC TGGTGGCAGG AGTCAATCAT
CTATTTGCCC AGCATCCCAA TCCTTTTATT AGCCAATCGA TTCCCTTTGA CAGGGTAAAA
ACACCCGCCA GTGCGGCGGC AAAACAGTTA GTCGAAAGTA CAGCCAATAG TGCCGCTCTG
CGGTTAAAAC TGTTACGCGA GGGCGAAACG GGGCTGAATA AAGCCAGCGC CAGACAAACA
TTGGCCGAAG ATACCGCCGC CGAGATTACC CGTTTACTCA CGGAGGCCGC CAATGGCCAA
TGCCATACGC CAAAAGGGCC ATTAATTGCT AAAGATATCG CCATTTTAGT GCGCGATAGA
AACGAAGCGG CCGTGATGAA AACCGCGCTG AGCAAGCGCC AAATTGGCGC GGTCTTTTTA
AGCCGCGACA GCGTATTTGA TACCGTTGAA GCGCGGGAAA TGGCGCTCAT TTTGCGCGCA
TTGGCCAGTC CCAAGGATGA GCGCGCCCTG CGCAGCGCTC TCGCCACCGC GCTACTTGGC
TATAGCGCAG AGCAAATTCA TGCCTTTAAC CAAGATGAAG AGCAGCGCCA AATGCTGCTC
GAACAGTTTT TTGCGCTACA TCAGATCTGG CAAAAACGCG GCATTATGCC AGCGCTGCTG
AGCTTAGCCA ACGCCACCCA CATGGTGGCA CGCCTACTGC AAACACCCAG CGTTACAGCC
ACTGCCGACC AAGATAGCGA AGAGCCCGAT GAGGCGAGTA ATGGCGAGAG GCGACTAACA
GATTTTCGCC ACTTAGCCGA GCTGTTGCAG CAAAAGGCCA CTGAGATTGA TGGCATCAGT
GCCCTACTCA ATTGGTATGA GCAACAACTT ATTGATAATA CAGGGACAGA TGAGCAGCAG
CTGCGCCTTG AGAGTGAGCA AAATCTGGTG CAAATCGTGA CTATTCATAA AAGTAAAGGG
CTGGAATACC CAGTGTGTTT TATCCCCTTT GTTAGCCTTG CACGGGATAA TCGCCGCCGC
CCGACACCCA TGCTCTATCA CAGAACTGAT GCGGATGGAG CGCAGGAGCT GGTATGGGAT
ATTGAAGGCA CAGACGAAGG CTGGGAGCAG GCAAAGCAAG AAACCTTAGC CGAAGATCTT
CGCCTACTTT ATGTGGCACT CACCCGCCCT GTGTACCTGT GTTATTTGTA CATCGCTAAC
CATAGCCGCA TGTTAAAAGC CGGGATCAAA AGCCAACTGC ATGAAACCGC TATCGGTTAT
CTTTTAGGAG TAACCGATGC CGGCTGTGAT TTTGCACGTC TGCACAGTGC AGCGCAGGCG
CTGCTTAATG GTGTAGAGTC GAATGCGCAA GCGATCAGCG TGGAATGCGT TGCTGACAAC
ATTGCTGATA ACAAGCTGCA CACGGGTGAA ACGCAATCCC ACACCTTAAA TGCCCGTAAT
GTCACCCGTC AGTATCGCAC CCCATGGCGA GTAGGCAGTT ATTCTGGCTT AGTCAAAAAT
GCGCCCCACG CCAAAGCCAG CCCGGGCGCC GATGATGAAG TTAGCGCGGT ATTTGGCGCA
GAACCCGCCA ATAGCCTAAG TGAATCCTCA TGGCAAGATA GCGCTGATGT ACCGCAGCTA
CCACTACTCA ATCGCTTTAG TTTTGAGCGC GGCGCCAATG CGGGGAGTTT TATGCACTTA
GTGCTTGAGT TAATTGATTT TACTCAGGCC AAAATCGATT TACCGCGTGA GTTACCTAAA
GCCATGCTGC AATATGGCAT CGCCCCCGAG TGGCAAACTG TATTGCAAGA CTGGTATATG
GAAATATTGC AGGCACCGCT GGCATTAATG GCGCAGGATA ATCAGCTCAT CAATCCCGAG
CTATGTCTAG CAGCGCTCGT GCCACAACAC ACCTTAGTGG AGATGGAGTT TTACCTGCCT
TTAAATCGAT TAAAAGATGC TGAGCTTAAT CAACTCCTCG GGCAATTTGG TTACGATACT
GCGCTACATT TCGATGAATT ACAGGGTATG CTCAAGGGCT TTATCGACTT AACCTTTGAA
TATCAAGGTA AGTTTTATAT CGCCGACTAC AAATCAAACC ATTTAGGCGA CACGATTCAG
GCTTACCATT ATGGAGCGCT TAAGCAGGCG ATTAGCGATC ATAGGTACGA TTTGCAATAC
ATTCTCTACT CCCTCGCCCT GCATCGTTAT TTGGCGATGC GACTGCCAAA CTATGACTAC
GATATCCATA TCGGCGGCTG TTATTACTTA TTTTTACGGG GAATGTCGGT TCAGTATCCC
GGCTTTGGGG TTTACTACGA TAAGCCACCT AAGGCGCTCA TTCTCGCCTT AGATGCGCTA
TTTAACCGCA GTCAAGATGA AAGCCATATG AGTCAACAAA ATACGGGAGC GATGGCATGA
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| Protein sequence | MILPTTSQAL PLDPLTLPFG GSRLIEASAG TGKTYTISGL YLRLLLGDGL SEPLSCEQIL
VVTFTNAATE ELRDRIRRRI QVAFKCFLGL EINDPFVQAL YDKTPESERA IALRRFDLAL
KSLDEAAIFT IHGFCQRILA DLAFESSLLF ESDFTLDDSE FLHHAVRDFW REACYPLPEY
LAQIIASEFG DPDGLVKQLR ALLGASEAKP LKPVQPFARL AESLSQSVQR FKLAWPRGRD
ALLALLHSLP LNGQRFGKAS DNYPKLAEMF DQLDNFIAFG HGLPPLKVLE ALSLSELKLN
KGGVLPSVSE APLLDHMEQL ATLINAIKPA FLFSAKQGIS ERFAKQKQLK NVLTPDDLLT
TLAAAMLANP DTLPKAVASR FPVALIDEFQ DTDPLQFAIF SWIYQTRLGV KAQNSTAVEP
KARTDSKLSL LMIGDPKQAI YAFRGADIYT YIEARRQTQA HYFLDTNYRS SRNLVAGVNH
LFAQHPNPFI SQSIPFDRVK TPASAAAKQL VESTANSAAL RLKLLREGET GLNKASARQT
LAEDTAAEIT RLLTEAANGQ CHTPKGPLIA KDIAILVRDR NEAAVMKTAL SKRQIGAVFL
SRDSVFDTVE AREMALILRA LASPKDERAL RSALATALLG YSAEQIHAFN QDEEQRQMLL
EQFFALHQIW QKRGIMPALL SLANATHMVA RLLQTPSVTA TADQDSEEPD EASNGERRLT
DFRHLAELLQ QKATEIDGIS ALLNWYEQQL IDNTGTDEQQ LRLESEQNLV QIVTIHKSKG
LEYPVCFIPF VSLARDNRRR PTPMLYHRTD ADGAQELVWD IEGTDEGWEQ AKQETLAEDL
RLLYVALTRP VYLCYLYIAN HSRMLKAGIK SQLHETAIGY LLGVTDAGCD FARLHSAAQA
LLNGVESNAQ AISVECVADN IADNKLHTGE TQSHTLNARN VTRQYRTPWR VGSYSGLVKN
APHAKASPGA DDEVSAVFGA EPANSLSESS WQDSADVPQL PLLNRFSFER GANAGSFMHL
VLELIDFTQA KIDLPRELPK AMLQYGIAPE WQTVLQDWYM EILQAPLALM AQDNQLINPE
LCLAALVPQH TLVEMEFYLP LNRLKDAELN QLLGQFGYDT ALHFDELQGM LKGFIDLTFE
YQGKFYIADY KSNHLGDTIQ AYHYGALKQA ISDHRYDLQY ILYSLALHRY LAMRLPNYDY
DIHIGGCYYL FLRGMSVQYP GFGVYYDKPP KALILALDAL FNRSQDESHM SQQNTGAMA
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