Gene SO_1873 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1873 
Symbol 
ID1169640 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp1970320 
End bp1970925 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content41% 
IMG OID637343764 
Productshort chain dehydrogenase 
Protein accessionNP_717481 
Protein GI24373438 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACTG TAATATTAAT TGGTGCATTG GGTAAGATGG GACAGGCGGC TTTAACAGGC 
TTAAGCAAAC ATAAAGTCAT TACCGCGGGG CGCTCAGGCA ATGTAGACCA CTTGGTCGAT 
ATCACAAATG AGAACTCTAT TAGAGCATTG TATGAAAAAG TTGGTCATTT TGATGCAGTT 
GTTAATACCG TTGGTTTTTG TGAATACGCA ACCTTTGCTG AAATGACAGA GGCACAATGG 
ATGACCACGG TCATGAGTAA AATGATGGGG CAAATTAACC TTGTTCGTAT TGGTCAAGAA 
TACATAGCTG ACAAAGGTTC ATTTACGCTA ATTAGCGGTA TTTTAAATGT AAAACCTATT 
CCTTGCGCTA TTGCCGATGC AACAACCAGT GGCGCAATTG ATACATTTGT AAAATGTGTT 
GCTTACGAAA TGCAAAGAGG TACTCGCATC AATGTTGTGA ACCCAACCGT TTTGACCGAA 
GCATGGGATG TTTACGGTGA TATGATGCCA GGCTTTGAAC CAGTGCCCAG TACTTTAGTT 
GGTAAAGCGT TCGAGCGTTC CGTAGATGGT TTTATTAATG GTGAAGTTTT ATTTGTTGAC 
GCTTAA
 
Protein sequence
MKTVILIGAL GKMGQAALTG LSKHKVITAG RSGNVDHLVD ITNENSIRAL YEKVGHFDAV 
VNTVGFCEYA TFAEMTEAQW MTTVMSKMMG QINLVRIGQE YIADKGSFTL ISGILNVKPI 
PCAIADATTS GAIDTFVKCV AYEMQRGTRI NVVNPTVLTE AWDVYGDMMP GFEPVPSTLV 
GKAFERSVDG FINGEVLFVD A