| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1679 |
|---|
| Symbol | |
|---|
| ID | 1169471 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 1766172 |
|---|
| End bp | 1767329 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637343585 |
|---|
| Product | acyl-CoA dehydrogenase family protein |
|---|
| Protein accession | NP_717290 |
|---|
| Protein GI | 24373247 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTTA ATTTCAACGA AGACCAACGC CAATTTGCTG AGCTAGCTCG CCAGTTTGCC
ACCGACGAAC TCGCCCCTTT TGCCGCCAAA TGGGACGAAG AACATCATTT CCCGAAGGAT
GTGATCCAAA AAGCCGGTGA GCTGGGTTTC TGCTCCCTGT ATTCCCCAGA ATCGGAAGGC
GGCATGGGCC TGTCGCGCTT AGATGCCTCG ATTATTTTCG AAGAGCTCTC TAAGGGCTGT
ACTGCTACGA CCGCCATGCT GACAATCCAC AATATGGCCA CTTGGATGGT GACCACTTGG
GGCACAGAGA CTTTGCGTCA AGCTTGGTCT GAGCCCTTGA CCACTGGGCA AATGCTGGCG
TCTTACTGCT TAACGGAGCC AGGCGCTGGC TCGGATGCGG CATCTTTGCA AACCAAAGCG
GTGCCTGATG GTGATGAATA CGTGGTTTCT GGCTCTAAGA TGTTTATCTC GGGCGCGGGT
TCTACTGAGC TTTTAGTCGT AATGTGCCGC ACGGGGCAAG CCGGGCCAAA GGGCATTTCG
GCGATTGCGA TCCCTGCCGA CAGTGAAGGC ATTATCTATG GCAAGGCTGA AGATAAAATG
GGCTGGAACG CGCAGCCGAC TCGCTTAGTT ACCTTTGATA ACGTGCGAGT GCCAGTTGCA
AACTTACTCG GTGAAGAAGG CCAAGGTTTT ACCTTTGCGA TGAAAGGCTT AGACGGTGGC
CGCATCAATA TTGCTACCTG CTCAGTGGGT ACGGCGCAGG CCGCTCTTGA GCGTGCAAGC
CAGTACATGA ATGAACGTCA ACAATTTGGT AAGCCATTGG CCGCTTTTCA AGCGCTGCAA
TTTAAGCTGG CTGATATGGC AACTGAATTA GTCGCCGCTC GCCAAATGGT GCGTTTAGCC
GCTTTTAAAC TCGACAGTGG CGACCCAGAA GGCACTGCCT ATTGTGCGAT GGCGAAGCGG
TTTGCCACCG ATGTGGGCTT TCAAGTTTGC GATGCGGCGC TGCAAATTCA TGGCGGATAT
GGCTATATCA GGGAGTATCC GTTAGAGCGT CATTTCCGAG ATGTTCGTGT ACATCAGATT
TTAGAGGGCA CTAACGAGAT TATGCGCCTC ATTATCGCCC GTCGTTTACT CGACGAGAAT
GCCGGACAAA TCCTCTAA
|
|---|
| Protein sequence | MDFNFNEDQR QFAELARQFA TDELAPFAAK WDEEHHFPKD VIQKAGELGF CSLYSPESEG
GMGLSRLDAS IIFEELSKGC TATTAMLTIH NMATWMVTTW GTETLRQAWS EPLTTGQMLA
SYCLTEPGAG SDAASLQTKA VPDGDEYVVS GSKMFISGAG STELLVVMCR TGQAGPKGIS
AIAIPADSEG IIYGKAEDKM GWNAQPTRLV TFDNVRVPVA NLLGEEGQGF TFAMKGLDGG
RINIATCSVG TAQAALERAS QYMNERQQFG KPLAAFQALQ FKLADMATEL VAARQMVRLA
AFKLDSGDPE GTAYCAMAKR FATDVGFQVC DAALQIHGGY GYIREYPLER HFRDVRVHQI
LEGTNEIMRL IIARRLLDEN AGQIL
|
|---|
| |