| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1651 |
|---|
| Symbol | |
|---|
| ID | 1169445 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 1737303 |
|---|
| End bp | 1740515 |
|---|
| Gene Length | 3213 bp |
|---|
| Protein Length | 1070 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637343559 |
|---|
| Product | Snf2 family protein |
|---|
| Protein accession | NP_717262 |
|---|
| Protein GI | 24373219 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGCCC GTGATTATGT GATGCAGGGG AGGGTGTTAA GTGCAAAAGC CAATGCCGAT
TTTCGCCATA TTGAAGGCTC GGTAGTGGGC AGTGAAACTT CGCCCTATCG TCAGGATATA
CGTCTGGTCA GCGTAAATCA TAAGCTCATC ATGAACGGTT TTTGCTCCTG TCCCGCAACG
GGACATTGCA AGCATATGGC TGCTGTGCTG TATAGCTTGC TCACCGATAA AACGGTTGAG
GATCAACGCA TAGTACAATG GTTACATTTG CTCGATGATG CCGATGATCC TCGTTTGAAC
GATGTTGAAT CCCTCTACGA TGATCGGGTG CTGTATATCC TGTCAAAGGA TAATAACGGG
GTTTTTATCG AGCTAAGACG CGGCAAGCTT GGGAAGAAAG GCGGTTATAA CAAGGGCTCC
AAGATTGCAC TTTCGGATGT GCAATATTAT ATGCCCGCAT GGATTGGTGC AGAGGATGTG
CTGATCATCA ACCTGATTAT GTCAACGAGG CGCCATGGCG CATCGCGGCT CTATCTTAAA
GCGCAGTTAG GCGCGGTTGC GCTCGAGAAA ATGCTCGCGA CCGAACGCTG TTTTTGGGAG
GAAAGTCGCC TCGCATTGAC CGCGGGCGAT GCCATTACGC CGCAGTTTAG TTGGCAAGAT
ATTGATAGTG AACACAAGCA AATGCGCCTT GTTTTGCCCA AGCGAGATAA CTGGGAGCTT
GTGCCAACCG AGCCTGCGTA TTATATCGAA CTCGATTACT TTCAAATTGG TCTTATCGAC
ACCGATATCA GTATTGAAAA ATTGCGTCTA CTCAGCCAAA TGCCGCCCGT GCCTCGAACT
CAGGTTGAGG TGGTGAGTCA TAAACTGATT AAACATTTTT CGGCGCGTAC AGTGCCGCTG
CCAAGTGCCA TCAATTTTGT CGAACTGAGG GATAAACTAC GGGTTCGGTT GAGCCTGAAT
ATGCTTTCGG CGGCATCGAC TCAGGCCAAT GCTACTCTGC CTAATACGAT CCTGCCCAAT
ACGACCCAAC TCAAGACAAC AACGCTGCAT GCTCAAGCTA TTACTATCAG CCAGCCCTAT
GTGACCTTGG CATTTATCTA CGGTGATGTC GTTTTGAGTG GTAATGCTGC TAAAGAAGCC
TTAACCCTTG TTACCCAAGG CGGAACGACC TATCAAATTA ACCGTGCGCT GGATGAAGAG
CAAGTTGCGG TTGAAACTTT ACAAACACTT GGATTTAGTC GCTTTATATT CGATATTGGC
AGTTTATCTT CCCACTGGCG TTTAGGGGCA TTGCCCGATG GGATTCGGGA GTGGTTGCAA
TTTATCGAGG AAGACGTGCC AAGATTACAA GCCCAAGGTG TTGAGGTGTT ATTGGCGCCC
GAGTTTAGCC TTAAGGTAGT TGACACGGCG TTAACGGTTG AGCTGGATGA CAGTAAAGAG
GGCTGGTTTT CGCTGTCTTT GCATGCGGAT ATCAATGGTC AGCGCCTACC CATGTTGCCG
CTGGTGGCCA CTTGGCTTAA ACAACATGGT GAGCCCGCCG ATGATGCAGA GCTATTGCTA
CCTAGCCCAA ATGGTGAGTG GCTTAAAATT AAAGCCAGTG TTATCAAACC CTTGATGAGT
ATTATTTTAG AGCTGTTTGA ACAGCACCGC GGCAACAGTA TCGCCTTACC TAAATATCGG
GCACATTTAC TCAATGAGTT AGCCCAGAGT GATATCAGCT TGCTCAATGG TGAGCGGGTG
CGCCAACTTG CGGCCAAATT AGAACAATTT ACTGGTGTTG TTGCGGTTAC TGCGCCAACC
CAATTACAGG CAGAACTGCG TCCCTACCAG CAACAGGGCT TAAATTGGCT ATGTTTTTTA
AAGGAATATC AGCTAGGTGG TATTTTAGCC GACGATATGG GATTGGGTAA AACCATTCAA
ACTTTGGCGT TCCTGTTGAA GCAAAAACAG CTTAAGTCAG CGGCTGGCCC TCATCTACCC
AGTTTAATTA TTTGCCCCAC CAGTTTGGTC GGGAACTGGG CAAAGGAGGC GGCGAAATTT
GCGCCTTCGT TAACACTGGC GGTGATCCAT GGTGCACAGC GAGGGCCGCT TTTGGCACGG
TTAAGTGAGT TTGATGTGGT TGTTACTACC TATCCGTTAA TGGTGAGGGA TAACGATTAT
TACCAGGCAC AAGCTTTTGA GCACATTGTG CTCGATGAAG CACAGCAGAT TAAAAATGCT
CAAGCTAAAG TCAGTCAGAT GATTAAAGCA CTGCAATCGC CATTTAAACT CTGCCTTACG
GGGACGCCCC TTGAAAACCA TTTAGGTGAA CTCAAATCCT TGATGGATTT TTGTTTGCCG
GGACTCCTTG GGACAACGGC TTATTTTAAT AAGGAGTTTC GCAATCGGAT TGAGCGTTAC
GGCGATAGCG AGCAGGTAAA AGTGTTGAGT CAACGCATTG CGCCCTTTGT GCTCAGACGG
ACTAAGGCGG AGGTAGTGAC TGAACTTCCG CCTAAAACCG AAATTTATCA AAGCCTTGAG
CTTGAGAAAG ATCAACGCAA TCTGTACGAG AGTATTCGCT TAAGTATGGA GAAAAAAATT
CGGGAATTAT TTGCTACTCA AGGGGTTGCT GGGAGTCATA TTGAGTTTTT AGATGCGTTG
CTTAAATTGC GCCAAGCCTG CTGCGACCCA AGATTGGTTA AACTGGAGCA GGCGCAAAAG
GTTAAAAATA ACGCCAAGCT TAACTGGCTT AGCCAAAATC TGCCGGAAAT GGTGCAGGAA
GGTCGCAAGA TTTTAATCTT CAGCCAATTT ACTAGCATGC TGATTTTGAT TGAAGAATTA
CTGCAATCCT TAGAGATCGA CTACAGCAAA TTGACAGGGC AAACTCGGCT ACGTCAGGTG
CAGATTGATA AATTCCAAGA AGGCGATACG CCAGTGTTTT TAATTAGCTT AAAGGCGGGT
GGAACCGGGC TTAATTTGAC CGCTGCTGAT ACGGTTATCC ATTACGATCC TTGGTGGAAT
CCTGCGGCCG AAAGGCAAGC CACTGACAGA GCACACCGTA TTGGCCAAGA AAACCCTGTG
TTTGTCTACA AGCTTATTGC CGAGGGAACG GTCGAAGAAA AAATCCAAGA GATGCAGCAG
CATAAACAAG GTTTAGCCGA TAGTATTCTT GAAGGTAAGG GCAATGGCGC GTGGCAAGGC
AGCGCCGATG AACTGCTATC TTTATTCCAC TAA
|
|---|
| Protein sequence | MRARDYVMQG RVLSAKANAD FRHIEGSVVG SETSPYRQDI RLVSVNHKLI MNGFCSCPAT
GHCKHMAAVL YSLLTDKTVE DQRIVQWLHL LDDADDPRLN DVESLYDDRV LYILSKDNNG
VFIELRRGKL GKKGGYNKGS KIALSDVQYY MPAWIGAEDV LIINLIMSTR RHGASRLYLK
AQLGAVALEK MLATERCFWE ESRLALTAGD AITPQFSWQD IDSEHKQMRL VLPKRDNWEL
VPTEPAYYIE LDYFQIGLID TDISIEKLRL LSQMPPVPRT QVEVVSHKLI KHFSARTVPL
PSAINFVELR DKLRVRLSLN MLSAASTQAN ATLPNTILPN TTQLKTTTLH AQAITISQPY
VTLAFIYGDV VLSGNAAKEA LTLVTQGGTT YQINRALDEE QVAVETLQTL GFSRFIFDIG
SLSSHWRLGA LPDGIREWLQ FIEEDVPRLQ AQGVEVLLAP EFSLKVVDTA LTVELDDSKE
GWFSLSLHAD INGQRLPMLP LVATWLKQHG EPADDAELLL PSPNGEWLKI KASVIKPLMS
IILELFEQHR GNSIALPKYR AHLLNELAQS DISLLNGERV RQLAAKLEQF TGVVAVTAPT
QLQAELRPYQ QQGLNWLCFL KEYQLGGILA DDMGLGKTIQ TLAFLLKQKQ LKSAAGPHLP
SLIICPTSLV GNWAKEAAKF APSLTLAVIH GAQRGPLLAR LSEFDVVVTT YPLMVRDNDY
YQAQAFEHIV LDEAQQIKNA QAKVSQMIKA LQSPFKLCLT GTPLENHLGE LKSLMDFCLP
GLLGTTAYFN KEFRNRIERY GDSEQVKVLS QRIAPFVLRR TKAEVVTELP PKTEIYQSLE
LEKDQRNLYE SIRLSMEKKI RELFATQGVA GSHIEFLDAL LKLRQACCDP RLVKLEQAQK
VKNNAKLNWL SQNLPEMVQE GRKILIFSQF TSMLILIEEL LQSLEIDYSK LTGQTRLRQV
QIDKFQEGDT PVFLISLKAG GTGLNLTAAD TVIHYDPWWN PAAERQATDR AHRIGQENPV
FVYKLIAEGT VEEKIQEMQQ HKQGLADSIL EGKGNGAWQG SADELLSLFH
|
|---|
| |