Gene SO_1642 details

Gene Information

• Locus tag: SO_1642
• Symbol: lpxB
• ID: 1169436
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 1724404
• End bp: 1725561
• Gene Length: 1158 bp
• Protein Length: 385 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 637343550
• Product: lipid-A-disaccharide synthase
• Protein accession: NP_717253
• Protein GI: 24373210
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0763] Lipid A disaccharide synthetase
• TIGRFAM ID: [TIGR00215] lipid-A-disaccharide synthase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAAAA AATCTCAATT AGTGTTTGCA ATGGTCGCCG GAGAACTCTC CGGCGATATT 
TTAGGTGCGG GGTTAATGGC CGCGCTGCAA AAAACACACC CCAATGCCCG TTTTGTCGGT 
ATTGGTGGAC CTCGAATGGA AGCCTTAGGC TTCGAATCCC TGTTTGCGAT GGAAGAGTTA 
GCCGTGATGG GGATTGTTGA AGTGCTATCG CGCTTGCCGC GATTACTTCA TGTGCGCGCC 
TCCTTGATTA AATCCATCAC CGAACTCAAG CCCGATTGTT TTATCGGGAT TGATGCACCG 
GATTTCAATA TCGGATTAGA GCTCAAGCTA AAAGCCCAGG GTATAAAAAC GGTACATTAT 
GTTAGCCCTT CGGTATGGGC GTGGCGGCCT AAGCGGATCT TTAAGATTGC TAAGGCTACC 
AATATGGTGT TGTCGTTATT GCCCTTCGAG AAAGCCTTTT ATGACAAGCA TCAAGTGCCT 
TGTACCTTTG TAGGCCATAC CTTGGCCGAT GACATTCCGC TCGAAAGCGA TAAGGCCTGC 
GCGCGTCAAG TGCTTGAGTT GGATCAAGAG GCGGAATATT TAGCCATTTT ACCTGGTTCG 
CGCGGCGGCG AGTTAAAGCA ACTAGCCGAG CCGTTTGTTA AGGCGGCATT GCTTATCAAA 
CAGCAATTTC CTGATATTCG CTTTGTGACG CCCTTAGTGA ATCAAAAGCG CCGTGAGCAG 
TTTGAACAAG CCTTAAAAGA TCACGCACCA GATCTGGAAA TCCATATGGT GGAAGGTAAG 
TCACGCGAAG TGATGGCCGC CGCCGATGGT ATTTTACTTG CATCGGGTAC GGCGACCTTA 
GAAGCGATGT TGATCAAACG CCCGATGGTG GTGGCGTATC GCGTCAGTCC ACTGACCTAT 
AGTATTGCCA AGCGTATGAT GCAGGTGAAT CGTTTTTCCT TGCCGAATCT ATTAGCAGGA 
TGCGATGTGG TGCCGGAACT TATTCAACAC GATTGCACGC CCGAGAAGAT TGCTGCCGCG 
GTTGGTGTTG AACTTAATCG AGACTTTGCG CCGATTAAGG CCGAATTTGA GCGTTTACAT 
CAAGTGCTGC GTTGTGATGC CAGCCAAAAA GCTGCAGAGG CGGTGTTAGC ACTCGTCGAT 
TTTAAGGAAG TGAATTAA 

 

Protein sequence

MSKKSQLVFA MVAGELSGDI LGAGLMAALQ KTHPNARFVG IGGPRMEALG FESLFAMEEL 
AVMGIVEVLS RLPRLLHVRA SLIKSITELK PDCFIGIDAP DFNIGLELKL KAQGIKTVHY 
VSPSVWAWRP KRIFKIAKAT NMVLSLLPFE KAFYDKHQVP CTFVGHTLAD DIPLESDKAC 
ARQVLELDQE AEYLAILPGS RGGELKQLAE PFVKAALLIK QQFPDIRFVT PLVNQKRREQ 
FEQALKDHAP DLEIHMVEGK SREVMAAADG ILLASGTATL EAMLIKRPMV VAYRVSPLTY 
SIAKRMMQVN RFSLPNLLAG CDVVPELIQH DCTPEKIAAA VGVELNRDFA PIKAEFERLH 
QVLRCDASQK AAEAVLALVD FKEVN