Gene SO_1635 details

Gene Information

• Locus tag: SO_1635
• Symbol: dxr
• ID: 1169429
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 1716293
• End bp: 1717483
• Gene Length: 1191 bp
• Protein Length: 396 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 637343543
• Product: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
• Protein accession: NP_717246
• Protein GI: 24373203
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase
• TIGRFAM ID: [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAAAATA TGGTGATTTT GGGTGCGACA GGCTCGATTG GTGCCAGCAC CTTAAGTGTG 
ATTTCGGCTA ATCCTACAGC CTATCGAGTG TATGCTTTAG TGGCGAATGC GAGCGTTGAT 
AAGATGCTCA CCCTGTGTTT GGCTCATCGC CCTCAGGTTG CTCATATGGT TGACCACAAA 
GCCGCTTTAG CACTCAAGGC GCAATTACCT GCAGCACTGA ATATCCAAGT CACCAGTGGT 
GAGGATGAGC TTATTGCCTT AGTCACCGCA CCAGCGGTTG ATACTGTGAT GGCGGCAATT 
GTTGGTGCAG CGGGGTTAGT GCCCACACTG GCGGCGGTGA AGGCGGGTAA GCGGGTATTG 
CTCGCCAATA AAGAGGCGTT GGTGATGTCC GGCGAGCTGT TTATTGAGGC CACCAGAGCC 
TCGGGCGCCA CTTTGCTGCC GGTCGACAGT GAACACAATG CGATTTTCCA ATGCTTGCCT 
GAAGAAGTGC AGAGCAATTT AGGGCGCTGC GACTTAGCGG CCTCTGGTAT TTCCCATATT 
TTACTAACTG GCTCTGGTGG TCCATTTTTA ACTGCAGAGC TATCAAATCT TGCGGCAATG 
ACGCCTGCGC AGGCCTGTAA ACATCCAAAT TGGTCCATGG GACCGAAGAT TTCAGTCGAC 
TCCGCCACGA TGATGAATAA AGGTTTAGAG TTTATTGAAG CCCGTTGGTT GTTCAACACC 
CAGAAAGACC AGTTGAAAGT GGTTATTCAT CCGCAGAGTG TTATTCACTC GATGGTACAA 
TACCGCGATG GTAGTGTGAT TGCGCAGATG GGCAACCCAG ACATGCGCAC GCCTATCGCC 
CATTGTATGT CCTATCCGCA AAGAATTCGC TCCGGTGTTG AACCTTTAGA TTTTTTCAAA 
GTCGGACAGT TAAGCTTTTG TGAGCCAGAC TTTAATCGCT TCCCTTGTTT AGCGTTAGCG 
ATAGAGGCTT GCTCCCAAGG CCAAGAGGCG ACAACGGTAC TTAATGCGGC CAATGAAATC 
GCCGTGGAGG CGTTTTTACA AGGTAAGATA GGGTTTACCC ATATCGGCAA GATAAACGAA 
GACTGTTTAT TGTCCGTCCC AAAACAGGCG ATGGCCAGCA TCGAAGATAT CATCGCCCTT 
GATGCCCAGA CACGGATATA TGCCCGTGAA TTACTAGCGA AATTCGCTTA G 

 

Protein sequence

MQNMVILGAT GSIGASTLSV ISANPTAYRV YALVANASVD KMLTLCLAHR PQVAHMVDHK 
AALALKAQLP AALNIQVTSG EDELIALVTA PAVDTVMAAI VGAAGLVPTL AAVKAGKRVL 
LANKEALVMS GELFIEATRA SGATLLPVDS EHNAIFQCLP EEVQSNLGRC DLAASGISHI 
LLTGSGGPFL TAELSNLAAM TPAQACKHPN WSMGPKISVD SATMMNKGLE FIEARWLFNT 
QKDQLKVVIH PQSVIHSMVQ YRDGSVIAQM GNPDMRTPIA HCMSYPQRIR SGVEPLDFFK 
VGQLSFCEPD FNRFPCLALA IEACSQGQEA TTVLNAANEI AVEAFLQGKI GFTHIGKINE 
DCLLSVPKQA MASIEDIIAL DAQTRIYARE LLAKFA