Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_1570 |
Symbol | |
ID | 1169375 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 1645940 |
End bp | 1647607 |
Gene Length | 1668 bp |
Protein Length | 555 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637343491 |
Product | GGDEF domain-containing protein |
Protein accession | NP_717183 |
Protein GI | 24373140 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAAAA CTAACTTGCA TAATTTCTGG TGCTTTTTGT TGCTGTTTTG GACTTTTAGT CCGTTTGCCC TTAGCGCTGA AATTGCGTTG GATTCCCCCT ACTTATTCCA CGCAGAGGCT AAGCAGCTTC CGCCTGCTGA TTTTAAAGAG GTCAGCCAGT GGATGGGGCA ATTAAAGGAG GCTAGCTCAG TAAGCCTTAC TGGTGGTGAT TATTGGATGG TTTCCCCTGT GATGGTCAAT AGCCGCCAAA CACGTTGGGT GGTAGATGCC AGTAATTCAA TTATTGAATC AGTGGATTAT TGGTTGCTGG GCAGTGATGG TTCTGTACAA TTCGCCCACA GTGGTTACTA CGCGCCCTAT GAGTTTTTAT TCGATTATGG GCGCAAGGTT AGGCTGAATA TGGGCACTGA TTATTGGTTA GTGACTAGAC TTAGCAGTCA ATATTTCTCC TCCGCGCCTG AAGTGGCATT AGAGTCGCAA GAGGCGCATC AATTAACGAC TGACCGCATG GCCATGGCGA TACTGCTTTG TTTGGGCGGG TTACTGTTTA TCGCTTTTTA TAATTTACTG ATTTACATCT CTATTTTTGA CAAGGCATTC TTGTATTACG GCCTATATGT ATTGGCTTAT TTGGGGGGGT GGGCGCTGAC GTTCCATTTA CCAGCTCACT TATTTAACTT CCATCAGCTT GAATTACATC ATTTGTTTTT TATCAGTTTG CCGATATTTA ACATTATGTT CTACAAACAT TTTTTGCAGC TTCCTAGTTA TTCACCTCGA TTGTGGCGGC TTAGCCAATA CTTGTTGATT GCCTGTGTTA TAGCCTTACC AACCAGCATT TGGTTGTTGC CCTATACCGC GATTATTGCC TCAGTCTTAA TCATGCTTTG GATTGCGCTG GCTATTACCT GCGGTAATGT GTGCTTGATG AAAGGCTTTG CTCCCGCACG CTATTTTATT ATGGCTTTTA CCTGTTTATT GCTACCAGCG GTCATTATTT TACCCGGTAA TATGGGGATA ACCCCCGATT TTATCGAGCA TGCTGAGTTT GCCACTTTAC TAGGCGGTAC TGTGGATGCC TTACTGTTAT CCCTTGCTTT GGCTAATAAA CTTAAGCTTA TGTCTGAAGA ACGTAAAGCA CACATCGAAG AGTTAGGTAT CGCTTGGGAA AAAGCACGGC TTGATGCATT AACGCGAGTA GGTAACCGTT ATGCCTTTGA TGAATTTATG AATTCTCAAT TAGCCTTTGC CAATAAGGTC GTTAACCCTA TGGCGCTGGT GCTGCTCAAT GCTGACAGCC TCAAGATGGT GAATGACACC TTAGGACATC AAGAGGGGGA TCGTTTACTA CAAAGACTTG TGCAGTTTTT GCAATCGACC AATATTGCCC AACTTAAAAT CTACCGAATC AGTGGTGATG AGTTTGTTGC TATCCTGCCT GCGAGTGGCG TGACGAGCTT TGTTAACACG CTAAGAGGAT TAACTGCGCA ATTTGCTACG GAGGGCTTTA GGGATTGCCA GTTTAGTTTT GGCATTGCGA TTAATGCTGA TGTAGCCAAC CCCCATGAGT GGCTTCGTAG CGCAGATACG AGTTTATATC ACTCGCGTAT GGAAAAACGG CGCCAGGAAT ATGCCGATAC CCGTACGGGG GAAATTGTTT CGCTCTAA
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Protein sequence | MSKTNLHNFW CFLLLFWTFS PFALSAEIAL DSPYLFHAEA KQLPPADFKE VSQWMGQLKE ASSVSLTGGD YWMVSPVMVN SRQTRWVVDA SNSIIESVDY WLLGSDGSVQ FAHSGYYAPY EFLFDYGRKV RLNMGTDYWL VTRLSSQYFS SAPEVALESQ EAHQLTTDRM AMAILLCLGG LLFIAFYNLL IYISIFDKAF LYYGLYVLAY LGGWALTFHL PAHLFNFHQL ELHHLFFISL PIFNIMFYKH FLQLPSYSPR LWRLSQYLLI ACVIALPTSI WLLPYTAIIA SVLIMLWIAL AITCGNVCLM KGFAPARYFI MAFTCLLLPA VIILPGNMGI TPDFIEHAEF ATLLGGTVDA LLLSLALANK LKLMSEERKA HIEELGIAWE KARLDALTRV GNRYAFDEFM NSQLAFANKV VNPMALVLLN ADSLKMVNDT LGHQEGDRLL QRLVQFLQST NIAQLKIYRI SGDEFVAILP ASGVTSFVNT LRGLTAQFAT EGFRDCQFSF GIAINADVAN PHEWLRSADT SLYHSRMEKR RQEYADTRTG EIVSL
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