| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1570 |
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| Symbol | |
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| ID | 1169375 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 1645940 |
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| End bp | 1647607 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637343491 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | NP_717183 |
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| Protein GI | 24373140 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAAAA CTAACTTGCA TAATTTCTGG TGCTTTTTGT TGCTGTTTTG GACTTTTAGT
CCGTTTGCCC TTAGCGCTGA AATTGCGTTG GATTCCCCCT ACTTATTCCA CGCAGAGGCT
AAGCAGCTTC CGCCTGCTGA TTTTAAAGAG GTCAGCCAGT GGATGGGGCA ATTAAAGGAG
GCTAGCTCAG TAAGCCTTAC TGGTGGTGAT TATTGGATGG TTTCCCCTGT GATGGTCAAT
AGCCGCCAAA CACGTTGGGT GGTAGATGCC AGTAATTCAA TTATTGAATC AGTGGATTAT
TGGTTGCTGG GCAGTGATGG TTCTGTACAA TTCGCCCACA GTGGTTACTA CGCGCCCTAT
GAGTTTTTAT TCGATTATGG GCGCAAGGTT AGGCTGAATA TGGGCACTGA TTATTGGTTA
GTGACTAGAC TTAGCAGTCA ATATTTCTCC TCCGCGCCTG AAGTGGCATT AGAGTCGCAA
GAGGCGCATC AATTAACGAC TGACCGCATG GCCATGGCGA TACTGCTTTG TTTGGGCGGG
TTACTGTTTA TCGCTTTTTA TAATTTACTG ATTTACATCT CTATTTTTGA CAAGGCATTC
TTGTATTACG GCCTATATGT ATTGGCTTAT TTGGGGGGGT GGGCGCTGAC GTTCCATTTA
CCAGCTCACT TATTTAACTT CCATCAGCTT GAATTACATC ATTTGTTTTT TATCAGTTTG
CCGATATTTA ACATTATGTT CTACAAACAT TTTTTGCAGC TTCCTAGTTA TTCACCTCGA
TTGTGGCGGC TTAGCCAATA CTTGTTGATT GCCTGTGTTA TAGCCTTACC AACCAGCATT
TGGTTGTTGC CCTATACCGC GATTATTGCC TCAGTCTTAA TCATGCTTTG GATTGCGCTG
GCTATTACCT GCGGTAATGT GTGCTTGATG AAAGGCTTTG CTCCCGCACG CTATTTTATT
ATGGCTTTTA CCTGTTTATT GCTACCAGCG GTCATTATTT TACCCGGTAA TATGGGGATA
ACCCCCGATT TTATCGAGCA TGCTGAGTTT GCCACTTTAC TAGGCGGTAC TGTGGATGCC
TTACTGTTAT CCCTTGCTTT GGCTAATAAA CTTAAGCTTA TGTCTGAAGA ACGTAAAGCA
CACATCGAAG AGTTAGGTAT CGCTTGGGAA AAAGCACGGC TTGATGCATT AACGCGAGTA
GGTAACCGTT ATGCCTTTGA TGAATTTATG AATTCTCAAT TAGCCTTTGC CAATAAGGTC
GTTAACCCTA TGGCGCTGGT GCTGCTCAAT GCTGACAGCC TCAAGATGGT GAATGACACC
TTAGGACATC AAGAGGGGGA TCGTTTACTA CAAAGACTTG TGCAGTTTTT GCAATCGACC
AATATTGCCC AACTTAAAAT CTACCGAATC AGTGGTGATG AGTTTGTTGC TATCCTGCCT
GCGAGTGGCG TGACGAGCTT TGTTAACACG CTAAGAGGAT TAACTGCGCA ATTTGCTACG
GAGGGCTTTA GGGATTGCCA GTTTAGTTTT GGCATTGCGA TTAATGCTGA TGTAGCCAAC
CCCCATGAGT GGCTTCGTAG CGCAGATACG AGTTTATATC ACTCGCGTAT GGAAAAACGG
CGCCAGGAAT ATGCCGATAC CCGTACGGGG GAAATTGTTT CGCTCTAA
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| Protein sequence | MSKTNLHNFW CFLLLFWTFS PFALSAEIAL DSPYLFHAEA KQLPPADFKE VSQWMGQLKE
ASSVSLTGGD YWMVSPVMVN SRQTRWVVDA SNSIIESVDY WLLGSDGSVQ FAHSGYYAPY
EFLFDYGRKV RLNMGTDYWL VTRLSSQYFS SAPEVALESQ EAHQLTTDRM AMAILLCLGG
LLFIAFYNLL IYISIFDKAF LYYGLYVLAY LGGWALTFHL PAHLFNFHQL ELHHLFFISL
PIFNIMFYKH FLQLPSYSPR LWRLSQYLLI ACVIALPTSI WLLPYTAIIA SVLIMLWIAL
AITCGNVCLM KGFAPARYFI MAFTCLLLPA VIILPGNMGI TPDFIEHAEF ATLLGGTVDA
LLLSLALANK LKLMSEERKA HIEELGIAWE KARLDALTRV GNRYAFDEFM NSQLAFANKV
VNPMALVLLN ADSLKMVNDT LGHQEGDRLL QRLVQFLQST NIAQLKIYRI SGDEFVAILP
ASGVTSFVNT LRGLTAQFAT EGFRDCQFSF GIAINADVAN PHEWLRSADT SLYHSRMEKR
RQEYADTRTG EIVSL
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