| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1422 |
|---|
| Symbol | |
|---|
| ID | 1169241 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 1481489 |
|---|
| End bp | 1482442 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 637343364 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | NP_717042 |
|---|
| Protein GI | 24373000 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGTTA TACCGCCGAT AAAATCTATT ATTTATTTTG AGGCCGCAGC TAGATTGCAA
AGTTTTAAAC TTGCCGCAAT GGAACTGAAT GTTACGCCAG GCGCAATTAG CCACCAGATA
AGCACATTAG AAGATTTTAT TGGGAAAAAG GTTTTTGAAA GAGGTAGTCG ACGTGTAACG
CTAACTTATT GTGGTTTAAG GTATTACTCA AGGATATCCA TTATTTTGCA AAACATGGAG
GAGGCTACTG TTGATCTCGG TATCGAAGGC AGCAAACCAA AAATTAAAAT AGCAATTCCA
CCCTCATTAT TAAAAAATTG GTTACTGCCC AGATTGGTTG ATGACAAACT AAAAGATCTC
AATCGTAGTG TGGAATTTAT TGATACATTA GATTATCTTG AATTTTCTAA GTGTGATTTA
GATCTAGCAA TACGTTATGG TTATGACTCG TGGGATAATC TTTACTCTGT TTTTCTATTT
CATGAGGAAA TGATTCCAGT ATGCCATCCT AATTATTTTA TTTCAGAGTT TACGGATTTT
ACTCAAGAGA TTATCGACAA CCACACGCTT ATATTTACGA ATAATCGCTT GGTTCAGTGG
GATATTGTTA TGCAATATTT CGGTCTAGAG CGAAAATCGA CCCAGAGTAA GCTCATTTTT
CAAAACTCGA TTCAAGCAAT TGAAGCGGCT ATTCAAGGCG CTGGCATTGC CTATGTGAAT
CGAATTCTTG TGTCAAAGGA GTTGAGTAAT GGCAGGTTAA TTCAACCTTT TGACATTTAT
ATGCCAAAAC ATAAATCTCC TGCATATCAT CTGGTCAGTA CCTATGAGCA TATGCAGGAC
GAAGCAACCT TTAAACTTTA CCAAACGATA TTGGAATTCG CGAAATCAAC TCCGCATCAA
CACATTGTAA ATGCTCAAGC TAAGCAAAAT GCATGGCTTG AGCATGCTGT TTAA
|
|---|
| Protein sequence | MRVIPPIKSI IYFEAAARLQ SFKLAAMELN VTPGAISHQI STLEDFIGKK VFERGSRRVT
LTYCGLRYYS RISIILQNME EATVDLGIEG SKPKIKIAIP PSLLKNWLLP RLVDDKLKDL
NRSVEFIDTL DYLEFSKCDL DLAIRYGYDS WDNLYSVFLF HEEMIPVCHP NYFISEFTDF
TQEIIDNHTL IFTNNRLVQW DIVMQYFGLE RKSTQSKLIF QNSIQAIEAA IQGAGIAYVN
RILVSKELSN GRLIQPFDIY MPKHKSPAYH LVSTYEHMQD EATFKLYQTI LEFAKSTPHQ
HIVNAQAKQN AWLEHAV
|
|---|
| |