Gene SO_1219 details

Gene Information

• Locus tag: SO_1219
• Symbol: deoB
• ID: 1169046
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 1266092
• End bp: 1267306
• Gene Length: 1215 bp
• Protein Length: 404 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637343171
• Product: phosphopentomutase
• Protein accession: NP_716842
• Protein GI: 24372800
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1015] Phosphopentomutase
• TIGRFAM ID: [TIGR01696] phosphopentomutase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACGTA CAGTTATAAT GATGTTGGAT TCCTTTGGCG TGGGCGCTGC TGGCGATGCC 
GCCAAGTTTG GTGATGTCGG TTCTGATACT TTTGGGCATA TCGCAAAGGC GTGTGCTGAA 
GGTAAAGCGG ATACTGGTCG TAAAGGCCCA TTAGCTCTGC CAAACTTGGC CCGTTTAGGG 
TTAGCCCATG CGGCGATGGA GAGTACTGGG GCGTTTGCAC CAGGCTTTGC CGACAATGTT 
GACTTGATTG GTGCCTATGG CCATGCTCAG GAATTAAGTT CGGGTAAAGA TACCCCGAGC 
GGTCACTGGG AAATGGCGGG AGTACCCGTA TTATTCGAAT GGGGCTATTT TAGCGAGCAC 
CAAAACTCAT TCCCTAAAGA ACTGACCGAT AAGATTTTAG CCCGTGCAGG ACTCGATGGC 
TTTTTAGGTA ACTGCCATGC TTCTGGTACT ACTATTCTGG AAGAATTAGG CGAAGAGCAC 
ATGCGCTCTG GCAAGCCAAT TTTTTACACC TCGGCAGATT CTGTATTCCA GATTGCCTGC 
CATGAAGGCA CATTTGGGTT AGAAAACCTA TATCGTCTTT GCGAAATCGC CCGTGAAGAG 
TTAGAACCTT ATAACATTGG CCGCGTGATT GCGCGTCCAT TCGATGGCAC AGGCCCAAGC 
GACTTTGCTC GTACTGGTAA CCGTAAGGAT TACTCGCTTG AGCCACCAGC GAAGACAGTG 
TTAGATAAGT TAAAAGCCGC CGGTGGCGAA GTGGTGAGTG TGGGCAAGAT TGCCGACATT 
TATGCTTACT GTGGTATTAC CAAAAAGGTG AAGGCAAACG GTTTAGAAGC GTTATTTGAT 
GCGACTTTAG CCGAAGTGAA ATCTGCGGGT GAAAATACTA TTGTATTCAC GAACTTTGTG 
GATTTTGACT CCCATTATGG CCACCGCCGT GATGTGGCGG GTTATGCGAA AGGATTAGAG 
TATTTCGATG CTCGCTTACC TGAAATGCTC GCACTGTTGG ATGAAGACGA TTTGTTAATT 
CTCACCGCTG ATCATGGCTG TGATCCTACT TGGCAAGGTA CAGATCATAC CCGTGAATAT 
GTGCCAGTAT TGGCGTATGG CGCAGGATTA AAAGCAGGTT CGTTAGGTCG TCGTAATAGT 
TTTGCTGATA TCGGCCAATC TATCGCGAGC TATTTCAAGC TTGAGCCGAT GGAATACGGT 
GAGTCGTTTA TCTAG 

 

Protein sequence

MKRTVIMMLD SFGVGAAGDA AKFGDVGSDT FGHIAKACAE GKADTGRKGP LALPNLARLG 
LAHAAMESTG AFAPGFADNV DLIGAYGHAQ ELSSGKDTPS GHWEMAGVPV LFEWGYFSEH 
QNSFPKELTD KILARAGLDG FLGNCHASGT TILEELGEEH MRSGKPIFYT SADSVFQIAC 
HEGTFGLENL YRLCEIAREE LEPYNIGRVI ARPFDGTGPS DFARTGNRKD YSLEPPAKTV 
LDKLKAAGGE VVSVGKIADI YAYCGITKKV KANGLEALFD ATLAEVKSAG ENTIVFTNFV 
DFDSHYGHRR DVAGYAKGLE YFDARLPEML ALLDEDDLLI LTADHGCDPT WQGTDHTREY 
VPVLAYGAGL KAGSLGRRNS FADIGQSIAS YFKLEPMEYG ESFI