Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_1218 |
Symbol | deoA |
ID | 1169045 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 1264751 |
End bp | 1266082 |
Gene Length | 1332 bp |
Protein Length | 443 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637343170 |
Product | thymidine phosphorylase |
Protein accession | NP_716841 |
Protein GI | 24372799 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0213] Thymidine phosphorylase |
TIGRFAM ID | [TIGR02643] thymidine phosphorylase [TIGR02644] pyrimidine-nucleoside phosphorylase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTTTCTAG CTCAAGAAAT TATACGTAAG AAACGCAATG GGTTAGTCTT AAGTGCCGAA GAGATACAGT TCTTCGTTAA GGGCATAACC ACCAATGCAG TGTCGGAAGG ACAGATCGCC GCATTAGGCA TGGCAGTGTA TTTTAATGAC ATGAATATGG ATGAAAGAAT CGCTTTGACC ACGGCAATGC GCGATTCTGG CACTGTACTC AATTGGCAAT CACTCAATCT TAATGGCCCT GTTATCGATA AACACAGCAC TGGTGGTGTC GGTGATGTGA TTAGTCTTAT GCTCGGCCCC ATGGCGGCTG CTTGTGGTGG CTATGTACCG ATGATTTCGG GTCGTGGCCT CGGTCATACT GGCGGTACGC TCGATAAGTT TGATGCAATT CCCGGTTACC AAACTGAACC TTCGAGTGAA TTGTTCCGCA AAGTGGTAAA AGATGTCGGT GTGGCGATTA TTGGGCAAAC TGGTGATCTC GTCCCCGCCG ATAAACGTTT CTACTCCATC CGTGACAACA CTGCTACCGT CGAATCCATC TCCCTCATTA CCGCCTCTAT TCTCTCTAAG AAATTAGCTT GTAGTCTCGA TGCATTGGCG ATGGACGTCA AAGTCGGTAG TGGCGCATTT ATGCCGACTT ACGAAGCCTC TGAAGAGCTT GCTCGCAGCA TCGCTGCGGT AGCCAATGGC GCTGGCACTA AAACCACAGC TTTACTCACC GACATGAACC AAGTATTAGC TTCATGTGCG GGTAATGCAC TTGAAGTAAA AGAAGCCATC GACTTCTTAA CCGGCGCTTA CCGTAATCCT CGTCTTTACG CTGTGACTAT GGGGCTTTGT GCCGAGATGT TACTCCTAGG TGGCCTAGCT ACCGATGAAG CGGATGCCCG TGCCAAGTTA AACCGCGTAT TAGATAACGG CCGCGCTGCC GAGATCTTCG GCAAGATGGT TTCTGGCCTC GGCGGTCCCG TTGATTTTGT CGAAAATTAC AGTAAGTACT TACCGCAATC GCAAATTATT CGTCCGGTAT TTGCCGATAC TCAAGGTTAT GCTCACAGCA TGGATACCCG TGAGCTTGGT TTAGCCGTGG TGACCTTAGG TGGCGGCCGC CGTAAACCTG GTGATGAGCT AGACTACAGT GTTGGTCTGA CTCAAGTGTG TGCCCTAGGT GATAAGATTG ATGCTTCTAC ACCGATTGCA GTGATCCACG CGCAATCCGA AGAAGCCTTT GCGCAGGCCG AAGACGCGGT GAAAAAAGCG ATTCATATTG ATGAAATCGC TCCAGAAAAA ACACCTGAGA TCTATGCTTA TATTCGAGCA ACGGATCTTT AA
|
Protein sequence | MFLAQEIIRK KRNGLVLSAE EIQFFVKGIT TNAVSEGQIA ALGMAVYFND MNMDERIALT TAMRDSGTVL NWQSLNLNGP VIDKHSTGGV GDVISLMLGP MAAACGGYVP MISGRGLGHT GGTLDKFDAI PGYQTEPSSE LFRKVVKDVG VAIIGQTGDL VPADKRFYSI RDNTATVESI SLITASILSK KLACSLDALA MDVKVGSGAF MPTYEASEEL ARSIAAVANG AGTKTTALLT DMNQVLASCA GNALEVKEAI DFLTGAYRNP RLYAVTMGLC AEMLLLGGLA TDEADARAKL NRVLDNGRAA EIFGKMVSGL GGPVDFVENY SKYLPQSQII RPVFADTQGY AHSMDTRELG LAVVTLGGGR RKPGDELDYS VGLTQVCALG DKIDASTPIA VIHAQSEEAF AQAEDAVKKA IHIDEIAPEK TPEIYAYIRA TDL
|
| |