| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1115 |
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| Symbol | pepD |
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| ID | 1168949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 1158327 |
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| End bp | 1159787 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637343066 |
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| Product | aminoacyl-histidine dipeptidase |
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| Protein accession | NP_716740 |
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| Protein GI | 24372698 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2195] Di- and tripeptidases |
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| TIGRFAM ID | [TIGR01893] aminoacyl-histidine dipeptidase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACAGCGT TAAGTCAGTT ATACCCACAA CCTTTATGGC AATGGTTCGA ACAAATCTGT
GCGATTCCCC ACCCTTCCAA ACATGAACAA TCACTCAGCC AACACATCCA AGCTTGGGCT
AAGCAGAAAC AGCTCGATGT GGTTGAAGAT GCTGTCGGTA ATGTCATTAT CCGCAAAGCT
GCGACTCCAG GAATGGAAGA TCGCAAAGTT GTGGTTATTC AAGCCCATAT CGATATGGTG
CCACAAAAAA ATGCCGATAA AGTGCATGAC TTTATTAAAG ATCCCATCGA AGCCTATGTC
GATGGCGACT GGGTTAAAGC TAAAGGCACC ACCTTAGGCG CCGACAACGG CATTGGTATG
GCCTCAGCCT TAGCGATTTT AGGCTCGGAC GATATCAAGC ATGGTCCACT CGAAGTACTG
CTCACTATTG ATGAAGAAGC CGGTATGACA GGCGCATTTG GCCTGCAGGC AGGTATGCTC
AATGCCGAGA TCCTGATCAA CACCGACTCA GAGCAAGAAG GTGAAATCTA TATGGGCTGC
GCTGGCGGCG TCGATGCCCA AATCACCCTG CCTATGGTAT GGCAAGCTTC AGAACAAAGT
TACGCTTCAT TTAGCCTGCA TTTATCAGGC TTAAAAGGTG GCCACTCTGG GGTCAACATT
CATTTAGGCC GTGGTAACGC CAACAAGATT TTGGCGCGCT TCCTGTTTGA AAATGCCGAT
GAGTTAGCGC TGGAATTAAC TCAATTTACC GGTGGTTCAC TGCGCAACGC CATCCCACGT
GAAGCCAATA TCAGCTTTAT GTTACCCGCT GAAAATATCG ATGCGCTCAA GGAAAAAGTG
CATGCCTTTG AAGCGTTAAT GCGTGCCGAA CTCGCTATTG CCGACCCAGA TTTACGTTTA
GTGTTAAGCA ACATTGCCAC GCCCAAACGC GTGATGAGCG AAAACAGCCA AAACACGCTT
ATCGATTTAC TGCATGTTTG CCCTAACGGC GTGATGCGCA TGAGCGATGA AGTGACTGGC
GTGACCGAAA CCTCACTCAA CGTTGGCGTG ATCAGCACTA ACGATGAAGA AGTTGGCATT
CTGTGCTTGA TTCGCTCATT GATCGATTCT GGCCGCAGCC AAGTTGAAGG TATGCTAAAT
GCGTTAACCA ACTTAGCAGG TGCTGACGTT GAATTTAGCG GTGCTTACCC TGGTTGGAAG
CCGGATAACA CTTCGCCTGT AATGGCGATT GTGCGTGAAA CCTACGAGTC TATCTACCAT
AAAGAGCCAG TGATCATGGT GATCCATGCA GGCCTTGAAT GTGGACTGTT TAAAAAGCCT
TATCCCGAAA TGGATATGGT CTCCATCGGC CCAACCATCC GCTATCCACA TGGTCCTGAT
GAAATGGTCA ATATCACCAC CGTTGGTCAG TATTGGGATC TACTCGTAGC CGTGCTAGAA
CGCATTCCCG TTAAAGCCTA A
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| Protein sequence | MTALSQLYPQ PLWQWFEQIC AIPHPSKHEQ SLSQHIQAWA KQKQLDVVED AVGNVIIRKA
ATPGMEDRKV VVIQAHIDMV PQKNADKVHD FIKDPIEAYV DGDWVKAKGT TLGADNGIGM
ASALAILGSD DIKHGPLEVL LTIDEEAGMT GAFGLQAGML NAEILINTDS EQEGEIYMGC
AGGVDAQITL PMVWQASEQS YASFSLHLSG LKGGHSGVNI HLGRGNANKI LARFLFENAD
ELALELTQFT GGSLRNAIPR EANISFMLPA ENIDALKEKV HAFEALMRAE LAIADPDLRL
VLSNIATPKR VMSENSQNTL IDLLHVCPNG VMRMSDEVTG VTETSLNVGV ISTNDEEVGI
LCLIRSLIDS GRSQVEGMLN ALTNLAGADV EFSGAYPGWK PDNTSPVMAI VRETYESIYH
KEPVIMVIHA GLECGLFKKP YPEMDMVSIG PTIRYPHGPD EMVNITTVGQ YWDLLVAVLE
RIPVKA
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