Gene SO_0940 details

Gene Information

• Locus tag: SO_0940
• ID: 1168786
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 971225
• End bp: 971968
• Gene Length: 744 bp
• Protein Length: 247 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637342907
• Product: transcriptional regulator-related protein
• Protein accession: NP_716569
• Protein GI: 24372527
• COG category: [K] Transcription
• COG ID: [COG3710] DNA-binding winged-HTH domains

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAAGTGG GGAGCTGTTG GTTTGACAAA GACCGTGGCT TGCTTGTCGA ACAGGCTCGG 
AACGAATCTT GGCACCTTCC TCGTGCTGAG CTACAGGTGC TGACTTTACT GGTTGAGCAT 
CAAGGTAAAC TGGTCTCAAA GCATGATCTT AAGACTGGTG ATGGCGAGCA CCCACCGCTA 
ACGGATACTT CACTCGCCCG TGCGGTATTT ATGATCCGCT CTTTTTTGGG GCCGCAATAT 
GAAGGGTTGA TTGAAACCGT CAAAGGCCAA GGTTATTTGC TGCACAATAC CCAAGGGCAG 
CGGTTAAAAA GTTTTCACTA CCACAGATTA CAGTCTTTAC CCTGGTGGAG TGTGCTGCTC 
GTGTTTGGCT TTATGTTGGC AATTTCAGGT TTTTATCTGA GTCGAATTGA CCACAGTGTT 
CCCACTGAAC CTCTATTATC AACCGAATTC CCCTTAGCAT CAGGGCAGCA TATACGCTTG 
CACCTTTATG CCAATTCTAA GACCAATAAT ACCTTGTTAT TTGAGTTAGG AGACCGCTTA 
GGGCAGGGCT TGAGCCTCTG TGAACACAGT GATTGGTCTG AAGTTTACTC TTCACTTTCC 
CATGATAAAC AAGTATTTAA TATTACTTTA CGAGGTCATA AGCTCGGGCA GTCGGTTATT 
CGGAATTTGA AGATTAGCGA TTTTAGACGC CCTAAAGAGT TTATTGATAC TCAGTGGCTA 
CAGGAGGTTG GGATCTGTGG CTAA 

 

Protein sequence

MQVGSCWFDK DRGLLVEQAR NESWHLPRAE LQVLTLLVEH QGKLVSKHDL KTGDGEHPPL 
TDTSLARAVF MIRSFLGPQY EGLIETVKGQ GYLLHNTQGQ RLKSFHYHRL QSLPWWSVLL 
VFGFMLAISG FYLSRIDHSV PTEPLLSTEF PLASGQHIRL HLYANSKTNN TLLFELGDRL 
GQGLSLCEHS DWSEVYSSLS HDKQVFNITL RGHKLGQSVI RNLKISDFRR PKEFIDTQWL 
QEVGICG