Gene SO_0905 details

Gene Information

• Locus tag: SO_0905
• Symbol: nqrD-1
• ID: 1168751
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 932313
• End bp: 932933
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 637342873
• Product: Na(+)-translocating NADH-quinone reductase subunit D
• Protein accession: NP_716535
• Protein GI: 24372493
• COG category: [C] Energy production and conversion
• COG ID: [COG1347] Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD
• TIGRFAM ID: [TIGR01939] NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAACA GTTTATCCAT GCGGGACATG CTAGCAGGCC CTGTGTTTGC TAATAACCCC 
GTAGCGATGC AAGTACTGGG CGTATGCTCG GCGCTGGCGG TGAGTAACTC CATGCAGACC 
GCGGTGGTGA TGACACTCGC GGTGACCTTC GTACTGGTGT TCTCCAACCT GATTATCTCT 
GCTATTCGCA ACTTTATCCC TAATAGTGTG CGGATTATTG CCCAGATGAC AGTAATTGCC 
TCCTTGGTCA TTATTGTTGA CATGGTATTG CAGGATGTGG CTTATGAGTT ATCTAAGCAA 
CTGTCTGTAT TTGTTGGGTT AATTATCACT AACTGTATCA TCATGGGCCG TGCAGAAGCC 
TTTGCGATGA AGTATCCACC GCACTTAGCT GTGGTCGATG CCGTGGGTAA CGCAGCGGGT 
TACGGTTTAG TGCTGATCAG TGTGGCCTTT GTGCGTGAGT TGTTAGGCAC GGGTAATCTG 
TTCGGCCATA GTGTGTTGAC TACGGTTGAA AACGGCGGCT GGTACTTACC TAACGAGATG 
TTTAAGTTGC CACCAAGCGC CTTCTTCCTG ATTGGCCTGC TGATCTGGAG CATTAACGTG 
ATCCAGCGTA AACGCGGTTA A 

 

Protein sequence

MSNSLSMRDM LAGPVFANNP VAMQVLGVCS ALAVSNSMQT AVVMTLAVTF VLVFSNLIIS 
AIRNFIPNSV RIIAQMTVIA SLVIIVDMVL QDVAYELSKQ LSVFVGLIIT NCIIMGRAEA 
FAMKYPPHLA VVDAVGNAAG YGLVLISVAF VRELLGTGNL FGHSVLTTVE NGGWYLPNEM 
FKLPPSAFFL IGLLIWSINV IQRKRG