Gene SO_0195 details

Gene Information

• Locus tag: SO_0195
• Symbol: ybbB
• ID: 1168081
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 204956
• End bp: 206086
• Gene Length: 1131 bp
• Protein Length: 376 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637342197
• Product: tRNA 2-selenouridine synthase
• Protein accession: NP_715837
• Protein GI: 24371795
• COG category: [R] General function prediction only
• COG ID: [COG2603] Predicted ATPase
• TIGRFAM ID: [TIGR03167] tRNA 2-selenouridine synthase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAACAA CGCTCATCCC GGCCCAGCAA TATCGCGATA TCTTTGTTGC TGGGAAGCCG 
TTGATCGACT TAAGGGCACC AATTGAATTT AATCGAGGCG CGTTTCCTTC CTCAGTCAAT 
CTGCCGTTAA TGGTCGATAA GGAGCGGGAA AAAGTCGGCA CTTGCTATAA ACAACAAGGT 
CAACAAGCCG CAATAGCCTT GGGCCATTCC CTTGTGCATG GCGCGGTAAA ACAACAAAGA 
ATTGATGCTT GGTTAGGATT TTTAGCAGCT CAGCCCGAGG CATACCTGTA CTGCTTTCGT 
GGCGGCCTAC GCTCACAATT AACTCAGCAA TGGCTGAAAG AAGCTGGCGC TACCGTACCT 
TATGTACAGG GCGGCTACAA AGGCATGCGC CAATATTTAA TTGGTGTAAT TGAGACAACA 
CCAAGCCAGC AACCCTTGCT AAGCCTGAGT GGCATGACGG GCAGTGGCAA AACCGATTTT 
TTAATACAAC GCAAAGAAGC GGTCGATCTT GAGGGCATAG CCAATCATAG GGGATCGAGT 
TTTGGCAAAA ATATCGACCC GCAACCGACA CAAATTAACT TTGAAAATCA GCTCGCCATC 
GCACTACTCC GCCACCAACA GGACAATCAT TCCTGCTTAC TGCTTGAGGA TGAAAGCTTT 
CTGATTGGCC GTTCTGCACT ACCGCAATCC TTTTACAACG CCATGCAAGC TGCCGATATT 
TTGGTATTAG AAGAAGCCGA CGACATTAGG CTAAATCGCT TACTCGATGA ATATGTCCAT 
AAAATGCATC AAGGTTTTGT TGAACGCTTA GGCATTGAGG CGGGCTTTAA TGCCTTTAGC 
CAATATCTAT TGCAAAGCCT TACGAGTATT CGTAAACGTC TCGGCGGTAA ACAATATCAA 
GAATTGCAAG ACACCATGCA ACAAGCGCTG TCGCAGCAGC TCAATCAAAA CCAAACATCG 
CAGCATTTGG CCTGGATAAA CCTGCTACTG CAGAAGTATT ACGATCCCAT GTATGAATAC 
CAATTAGAAA AAAAAGCACA CCGAGTGCTT TTTAGGGGAA ATCACCAAGC CATGCATGAG 
TGGTTAGATA ACTTATCGCA AGATAGCTTA TCGCAAGAGA ATCTCGGCTA A 

 

Protein sequence

MTTTLIPAQQ YRDIFVAGKP LIDLRAPIEF NRGAFPSSVN LPLMVDKERE KVGTCYKQQG 
QQAAIALGHS LVHGAVKQQR IDAWLGFLAA QPEAYLYCFR GGLRSQLTQQ WLKEAGATVP 
YVQGGYKGMR QYLIGVIETT PSQQPLLSLS GMTGSGKTDF LIQRKEAVDL EGIANHRGSS 
FGKNIDPQPT QINFENQLAI ALLRHQQDNH SCLLLEDESF LIGRSALPQS FYNAMQAADI 
LVLEEADDIR LNRLLDEYVH KMHQGFVERL GIEAGFNAFS QYLLQSLTSI RKRLGGKQYQ 
ELQDTMQQAL SQQLNQNQTS QHLAWINLLL QKYYDPMYEY QLEKKAHRVL FRGNHQAMHE 
WLDNLSQDSL SQENLG