Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A4803 |
Symbol | treR |
ID | 6484478 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 4677441 |
End bp | 4678388 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 642740016 |
Product | trehalose repressor |
Protein accession | YP_002043694 |
Protein GI | 194443516 |
COG category | [K] Transcription |
COG ID | [COG1609] Transcriptional regulators |
TIGRFAM ID | [TIGR02405] trehalose operon repressor, proteobacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.94717 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 88 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAAACC GGCTCACTAT CAAAGACATC GCCCGCCTGA GCGGCGTAGG GAAATCAACC GTTTCCCGCG TGCTTAACAA TGAAAGCGGC GTAAGCGAAC GTACCCGCGA GCGTGTCGAA GCGGTGATGA ATCAACACGG TTTCTCCCCG TCCCGCTCCG CCCGTGCGAT GCGGGGACAA AGCGATAAAG TGGTCGCTAT TATCGTCACT CGCCTTGATT CGTTGTCTGA AAACCTCGCG GTTCAAACCA TGCTGCCTGC GTTTTATGAA CAGGGCTACG ACCCTATTAT GATGGAAAGT CAGTTCTCGC CGACGCTGGT AATGGAACAT CTGGGCATGC TCAGACGACG TAACATTGAT GGCGTGGTGC TGTTTGGCTT TACCGGCATC ACAGAAGAGT TGATCGCCCC CTGGAAAGCC TCGCTGGTGC TGCTGGCAAG AGATGCGCAA GGTTTTGCCT CCGTCTGTTA CGACGACGAG GGCGCGATTC ATATCCTTAT GCAGCGGCTG TATGAGCAGG GACACCGCAA CATTAGCTTT CTGGGCGTTC CCCATAGCGA TATTACCACC GGCAAACGTC GGCATGACGC ATACCTGGCG TTTTGCAAAA AACATAAACT TCATCCCGTC GCCGCCCTGC CCGGTCTTGC CATGAAGCAG GGCTATGAGC ATACGGCAAG CGTCATCATG CCGGATACCA CCGCGTTAGT CTGCGCCACC GATACGCTGG CGTTGGGCGC CAGTAAGTAT TTACAGGAGC AACGTATTGA GACGCTGCAA CTGGCAAGCG TCGGGAACAC GCCGCTGATA AAATTCCTGC ACCCGGAGAT CGTCACTGTC GATCCTGGCT ATGCTGAAGC CGGACGACAG GCGGCTTCGC AGCTGATCGA ACAGATCAAT GGCCGCTGCG ATCCGCGCCG GATCGTCATT CCTTCTACCC TCGCCTGA
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Protein sequence | MQNRLTIKDI ARLSGVGKST VSRVLNNESG VSERTRERVE AVMNQHGFSP SRSARAMRGQ SDKVVAIIVT RLDSLSENLA VQTMLPAFYE QGYDPIMMES QFSPTLVMEH LGMLRRRNID GVVLFGFTGI TEELIAPWKA SLVLLARDAQ GFASVCYDDE GAIHILMQRL YEQGHRNISF LGVPHSDITT GKRRHDAYLA FCKKHKLHPV AALPGLAMKQ GYEHTASVIM PDTTALVCAT DTLALGASKY LQEQRIETLQ LASVGNTPLI KFLHPEIVTV DPGYAEAGRQ AASQLIEQIN GRCDPRRIVI PSTLA
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