| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A4532 |
|---|
| Symbol | |
|---|
| ID | 6483380 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 4406852 |
|---|
| End bp | 4407610 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 642739758 |
|---|
| Product | DeoR family regulatory protein |
|---|
| Protein accession | YP_002043440 |
|---|
| Protein GI | 194444242 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.194057 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 81 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCAA TTAAAAGACG AAAACATATT CTTGATGAAT TAAACAAATT CGGTGAAGTC
ACCGTTATTA AATTATCGGA AATGCTCAAC GTCACCTCAG AAACCATTCG TCGCGATCTC
TCCTTACTGG AATCTGACGG CAAAATCACT AAGATTCATG GGGGCGCAGT CAAAAAGCAA
GTTGTCCAGG AGGATGCGTT TAGCGCAAGA ATAGAGGCGC ATCGCGAAGA GAAAATAGCG
ATTGGCAAAC TTGCCGCCGA AATGGTCAGT GAACGGGATA CATTGTTTAT TGATTCCTGT
ACAACTAACC TTATTCTGGC CGAGCAATTA CCGCCTCTCG CTTTTTCCGT GATTACCAAT
TCAGCCCTGA TTGCCGATAA AATTAAAGAG CATAACCTGC AGGCCCGCGT GTATGTATTA
GGCGGCGAAT ATGATTACCA TTTTCGCGCC AACCTCGGCG TCTCGGTGTG TCAGCAGATT
AACGCAATTC ACGCGGATAT CTGTTTTATT GGCGCTGGCG GCATTTCTCC CCAGCATGGC
GTGTTGGTGA AGAGCTTTGA AGAAGCCTAC GTTGCCAAAG CCATGATTGC GATGAGCAAA
AAATCAGTGA TTCTCGCTGA CCATACCAAA TTTGGTCAGG ACGGTGTGAT GTGCATCGCA
AGCGTAAAAG AAATCGATAA CATCATCACG GATAAAGGAT TTACGTCAAC GGGTTATACG
CCACAGGATT TCGCTGGAAA GCTGCGGATT GCTGACTGA
|
|---|
| Protein sequence | MNPIKRRKHI LDELNKFGEV TVIKLSEMLN VTSETIRRDL SLLESDGKIT KIHGGAVKKQ
VVQEDAFSAR IEAHREEKIA IGKLAAEMVS ERDTLFIDSC TTNLILAEQL PPLAFSVITN
SALIADKIKE HNLQARVYVL GGEYDYHFRA NLGVSVCQQI NAIHADICFI GAGGISPQHG
VLVKSFEEAY VAKAMIAMSK KSVILADHTK FGQDGVMCIA SVKEIDNIIT DKGFTSTGYT
PQDFAGKLRI AD
|
|---|
| |