| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A4047 |
|---|
| Symbol | |
|---|
| ID | 6484001 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 3937904 |
|---|
| End bp | 3939013 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642739305 |
|---|
| Product | putative pyridoxal phosphate-dependent enzyme |
|---|
| Protein accession | YP_002043014 |
|---|
| Protein GI | 194442402 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1921] Selenocysteine synthase [seryl-tRNASer selenium transferase] |
|---|
| TIGRFAM ID | [TIGR01437] uncharacterized pyridoxal phosphate-dependent enzyme |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 0.0548491 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCCGA ATATCTATCA ACAACTGAGG TTGAAAAAGG TCATTAACGC CTGCGGCAAA
ATGACCATTC TGGGCGTCTC AAGCGTCGCG CCGGAGGTCA TGCAGGCCAC CGCGCGCGCG
GCTTCCGCTT TTGTCGAGAT TGACGCGCTG GTGGAAAAAA CCGGCGAACT GGTATCGCGC
TATACGGGTG CTGAAGATAG CTATATCACC TCGTGCGCCT CGGCGGGTAT TGCCATTGCC
GTCGCTGCCG CTATCACCCA CGGCGATCGG GCGCGCGTCG CCCTGATGCC GGACAGTACC
GGTATGGCCA ATGAGGTAGT GATGCTGCGC GGGCATAATG TGGACTACGG CGCGCCAGTC
ACCAGCGCCA TTCGTCTTGG CGGCGGGCGC ATAGTGGAAG TGGGGGCGAG CAATCTGGCG
GCCCGCTGGC AACTGGAAAG CGCCATTAAT GAAAAGACCG CCGCGCTACT CTATGTGAAA
TCACACCATT GCGTACAGAA AGGCATGTTG AGCATTGACG ATTTTGTACA GGTGGCGCAG
GCCAACCACC TGCCATTGAT TGTCGATGCC GCGGCGGAAG AGGATTTGCA CGGCTGGGTG
GCGAGCGGCG CGGATATGGT TATCTATAGC GGCGCGAAAG CCTTTAATGC GCCAACCTCC
GGGTTTATCA CTGGTAAGAA AACGTGGATT GCCGCCTGCA AAGCGCAGCA CCAGGGGATT
GCCAGGGCGA TGAAAATCGG CAAGGAAAAC ATGGTTGGGC TGGTGTATGC GCTGGAGAAT
TACCACCAGG GCCAGACGAC CGTGACCGCC GCACAGTTAC AGCCGGTCGC GGAAGCGATT
TCCGCCATCC ATGGACTTTA TGCCGATATC GAACAGGATG AGGCCGGGCG TGCAATCTGG
CGTATTCGTG TGCGGGTGAA CGCATCTGAA TTGGGGCTGA ACGCGCAGGA CGTCGAAGCG
CAGTTGCGCG GCGGCGAGAT AGCGATTTAC GCCCGCAAAT ATCAGCTTCA TCAGGGGGTT
TTTAGCCTCG ATCCACGCAC GGTAGCTGAA GGGGAAATGG CATTGATTGT GGCGCGACTC
AGGGAGATTG CAGAACATGC AGCAGATTAA
|
|---|
| Protein sequence | MTPNIYQQLR LKKVINACGK MTILGVSSVA PEVMQATARA ASAFVEIDAL VEKTGELVSR
YTGAEDSYIT SCASAGIAIA VAAAITHGDR ARVALMPDST GMANEVVMLR GHNVDYGAPV
TSAIRLGGGR IVEVGASNLA ARWQLESAIN EKTAALLYVK SHHCVQKGML SIDDFVQVAQ
ANHLPLIVDA AAEEDLHGWV ASGADMVIYS GAKAFNAPTS GFITGKKTWI AACKAQHQGI
ARAMKIGKEN MVGLVYALEN YHQGQTTVTA AQLQPVAEAI SAIHGLYADI EQDEAGRAIW
RIRVRVNASE LGLNAQDVEA QLRGGEIAIY ARKYQLHQGV FSLDPRTVAE GEMALIVARL
REIAEHAAD
|
|---|
| |