| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3940 |
|---|
| Symbol | |
|---|
| ID | 6484852 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 3820503 |
|---|
| End bp | 3821681 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642739200 |
|---|
| Product | xylose operon regulatory protein |
|---|
| Protein accession | YP_002042910 |
|---|
| Protein GI | 194444174 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators
[COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 64 |
|---|
| Fosmid unclonability p-value | 0.688005 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGATA AACGTCACCG CATCACTCTG TTATTTAACG CGAATAAAGC CTATGACCGT
CAGGTAGTGG AGGGGGTGGG TGAATATTTA CAAGCCTCGC AATCCGAATG GGATATATTT
ATTGAGGAAG ATTTCCGTGC CCGTATCGAT AACATTAAAG AGTGGTTAGG CGACGGCGTT
ATTGCCGATT ACGATGATGA CGATATCGCG CAATTATTGG CCGATGTCGA CGTCCCCATT
GTCGGGGTCG GCGGTTCTTA CCATCTTGCT GAAAATTATC CCGCCGTTCA TTACATCGCC
ACCGATAATC ATGCGCTCGT TGAAAGCGCT TTCCTGCATT TAAAAGAAAA AGGCGTTAAC
CGCTTCGCGT TTTACGGTTT GCCCGACTCC AGCCGCAAAC ATTGGGCGGC GGAACGGGAA
TACGCCTTTC GCCAGCTGGT CGCCGAGGAA AAATACCGCG GCGTAGTCTA TCAGGGACTG
GAAACCGCGC CGGAAAACTG GCAGCACGCG CAAAATCGCC TCGCCGACTG GCTTCAGACG
CTGCCGCCGC AAACCGGCAT CATTGCCGTA ACGGATGCCC GCGCCCGTCA CGTATTGCAG
GCCTGTGAAC ACCTGCATAT TCCGGTGCCG GAAAAACTTT GCGTTATCGG TATTGATAAC
GAAGAGTTAA CCCGTTATCT GTCGCGCGTC GCGCTTTCCT CCGTCGCGCA GGGGGCGCGG
CAAATGGGCT ATCAGGCGGC GAAGCTGCTG CACCGTTTGC TGGCGCGCGA AGAGATGCCG
TTACAGCGCA TTCTGGTGCC GCCGGTGCGC GTCATTGCGC GCCGCTCGAC AGACTATCGC
TCCCTGACCG ATCCGGCGGT TATCCAGGCG ATGCACTTTA TTCGTAACCA TGCCTGTAAG
GGCATTAAAG TCGAGCAGGT GCTGGACGCG GTTGGGATTT CACGTTCAAA CCTGGAAAAA
CGTTTTAAGG AGGAAGTTGG CGAGACGATA CATGCGCTGA TCCACGCCGA AAAGCTGGAA
AAAGCGCGTA GTTTGTTGAT TTCTACCACG TTGGCGATAA ACGAAATTTC GCAAATGTGC
GGCTACCCGT CACTGCAATA TTTCTATTCG GTGTTTAAAA AGGAGTACGT AACTACGCCT
AAGGAGTATC GCGACCAGCA TAGTGAAGCG TTGTTGTAG
|
|---|
| Protein sequence | MFDKRHRITL LFNANKAYDR QVVEGVGEYL QASQSEWDIF IEEDFRARID NIKEWLGDGV
IADYDDDDIA QLLADVDVPI VGVGGSYHLA ENYPAVHYIA TDNHALVESA FLHLKEKGVN
RFAFYGLPDS SRKHWAAERE YAFRQLVAEE KYRGVVYQGL ETAPENWQHA QNRLADWLQT
LPPQTGIIAV TDARARHVLQ ACEHLHIPVP EKLCVIGIDN EELTRYLSRV ALSSVAQGAR
QMGYQAAKLL HRLLAREEMP LQRILVPPVR VIARRSTDYR SLTDPAVIQA MHFIRNHACK
GIKVEQVLDA VGISRSNLEK RFKEEVGETI HALIHAEKLE KARSLLISTT LAINEISQMC
GYPSLQYFYS VFKKEYVTTP KEYRDQHSEA LL
|
|---|
| |