| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3601 |
|---|
| Symbol | |
|---|
| ID | 6486142 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 3488571 |
|---|
| End bp | 3490061 |
|---|
| Gene Length | 1491 bp |
|---|
| Protein Length | 496 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642738877 |
|---|
| Product | putative sialic acid transporter |
|---|
| Protein accession | YP_002042594 |
|---|
| Protein GI | 194445856 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00891] putative sialic acid transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 84 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACTT CTACCCAAAA CATCCCGTGG TATCGCCATC TCAACCGGGC GCAGTGGCGG
GCATTTTCCG CTGCCTGGCT GGGATATCTG CTTGATGGTT TTGATTTTGT GTTGATTGCT
CTTGTACTGA CTGAGGTACA AAGCGAATTT GGGCTGACGA CGGTACAGGC GGCAAGCCTG
ATTTCTGCGG CTTTTATCTC TCGCTGGTTC GGCGGGTTAT TACTGGGCGC GATGGGCGAT
CGCTATGGGC GTCGTCTGGC GATGGTCAGC AGCATCATTC TGTTTTCGGT GGGAACCCTG
GCATGCGGGT TTGCGCCCGG TTACACCACC ATGTTCATCG CCCGACTGGT GATTGGTATG
GGCATGGCGG GCGAATATGG TTCCAGCGCG ACCTATGTGA TTGAAAGCTG GCCAAAACAT
TTACGCAATA AAGCCAGCGG TTTTCTGATT TCCGGCTTCT CCGTCGGCGC GGTCGTTGCC
GCGCAGGTGT ACAGCCTGGT GGTGCCTGTC TGGGGCTGGC GCGCGCTGTT TTTCATTGGC
ATTTTGCCAA TTATCTTCGC TCTCTGGCTG CGGAAAAACA TTCCGGAAGC GGAAGACTGG
AAAGAGAAAC ACGCGGGTAA AGCGCCGGTA CGCACGATGG TCGACATTCT TTATCGGGGC
GAGCATCGCA TCATCAACAT TTTAATGACT TTCGCCGCCG CCGCTGCGCT GTGGTTCTGT
TTTGCCGGTA ACCTACAAAA TGCTGCGATT GTGGCGGGGC TGGGACTACT GTGCGCGGTT
ATCTTTATCA GCTTTATGGT GCAGAGCAGC GGTAAACGCT GGCCCACTGG CGTCATGCTG
ATGCTGGTGG TACTGTTTGC TTTCCTCTAT TCCTGGCCGA TTCAGGCGCT GTTACCCACT
TATCTGAAAA CCGAGCTGGC CTACGATCCG CATACGGTGG CGAATGTCCT GTTCTTTAGC
GGATTTGGCG CGGCGGTTGG TTGCTGCGTA GGCGGTTTTC TTGGCGACTG GCTGGGAACG
CGTAAAGCAT ATGTCTGTAG CCTGCTGGCC TCGCAAATCC TCATTATTCC GGTCTTTGCG
ATTGGCGGCA CAAACGTCTG GGTTCTGGGT CTGCTACTGT TTTTCCAACA GATGTTGGGG
CAGGGGATTG CCGGGATTCT ACCGAAACTG ATCGGCGGTT ACTTCGATAC CGATCAGCGC
GCGGCGGGGC TGGGCTTTAC TTATAACGTC GGCGCGCTCG GCGGCGCGCT GGCACCGATC
CTGGGAGCGC TGATCGCTCA ACGTCTGGAT CTGGGCACTG CGCTGGCATC GCTCTCTTTC
AGCCTGACGT TTGTCGTGAT CCTGCTTATT GGGCTTGATA TGCCGTCTCG CGTACAGCGT
TGGCTACGTC CGGAAGCGTT ACGTACCCAC GATGCTATCG ACGACAAACC GTTCAGCGGA
GCCGTACCGC TTGGCAGTGG TAAAGGTGCC TTTGTAAAAA CGAAAAGTTA A
|
|---|
| Protein sequence | MSTSTQNIPW YRHLNRAQWR AFSAAWLGYL LDGFDFVLIA LVLTEVQSEF GLTTVQAASL
ISAAFISRWF GGLLLGAMGD RYGRRLAMVS SIILFSVGTL ACGFAPGYTT MFIARLVIGM
GMAGEYGSSA TYVIESWPKH LRNKASGFLI SGFSVGAVVA AQVYSLVVPV WGWRALFFIG
ILPIIFALWL RKNIPEAEDW KEKHAGKAPV RTMVDILYRG EHRIINILMT FAAAAALWFC
FAGNLQNAAI VAGLGLLCAV IFISFMVQSS GKRWPTGVML MLVVLFAFLY SWPIQALLPT
YLKTELAYDP HTVANVLFFS GFGAAVGCCV GGFLGDWLGT RKAYVCSLLA SQILIIPVFA
IGGTNVWVLG LLLFFQQMLG QGIAGILPKL IGGYFDTDQR AAGLGFTYNV GALGGALAPI
LGALIAQRLD LGTALASLSF SLTFVVILLI GLDMPSRVQR WLRPEALRTH DAIDDKPFSG
AVPLGSGKGA FVKTKS
|
|---|
| |