| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3579 |
|---|
| Symbol | lptA |
|---|
| ID | 6485272 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 3465135 |
|---|
| End bp | 3465689 |
|---|
| Gene Length | 555 bp |
|---|
| Protein Length | 184 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642738859 |
|---|
| Product | lipopolysaccharide transport periplasmic protein LptA |
|---|
| Protein accession | YP_002042576 |
|---|
| Protein GI | 194444431 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1934] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03002] lipopolysaccharide transport periplasmic protein LptA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 77 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTCA AAACAAACAA ACTCAGCCTT AATCTTATGC TTGCCGGCTC GCTGCTGGCC
GCCAGCATTC CGGCTTTCGC CGTCACGGGC GATACCGAAC AGCCTATTCA TATTGACTCG
GATCAACAGT CGCTGGATAT GCAAGGCAAC GTCGTGACCT TTACGGGCAA CGTGGTGATG
ACCCAGGGCA CGATTAAGAT CAACGCCGAT AAAGTCGTGG TTACCCGCCC TGGCGGCGAA
CAGGGGAAAG AGGTGATCGA CGGTTACGGC AATCCGGCCA CCTTCTACCA GATGCAGGAC
AACGGTAAGC CGGTGAAAGG CCACGCTTCC CATATGCACT ACGAGCTGGC GAAAGATTTT
GTGGTGCTGA CCGGCAACGC TTATCTGGAG CAGCTTGACA GCAACATTAC CGGCGACAAA
ATCACCTACC TGGTGAAAGA GCAGAAAATG CAGGCCTTCA GCGAGAAAGG CAAACGCGTC
ACCACCGTTC TGGTGCCGTC GCAGTTGCAA GACAAAAACA AAGGCCAGAC TCCGGCGCAA
AAGAAGAGTA ACTAA
|
|---|
| Protein sequence | MKFKTNKLSL NLMLAGSLLA ASIPAFAVTG DTEQPIHIDS DQQSLDMQGN VVTFTGNVVM
TQGTIKINAD KVVVTRPGGE QGKEVIDGYG NPATFYQMQD NGKPVKGHAS HMHYELAKDF
VVLTGNAYLE QLDSNITGDK ITYLVKEQKM QAFSEKGKRV TTVLVPSQLQ DKNKGQTPAQ
KKSN
|
|---|
| |