Gene SNSL254_A3522 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A3522 
Symbol 
ID6483137 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp3416743 
End bp3418785 
Gene Length2043 bp 
Protein Length680 aa 
Translation table11 
GC content58% 
IMG OID642738805 
ProductLppC superfamily 
Protein accessionYP_002042524 
Protein GI194442208 
COG category[R] General function prediction only 
COG ID[COG3107] Putative lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.173213 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones92 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTACCCT CAACATTTTC TCGTTTGAAC GCCGCGCGCG CGCTGCCTGT CGTCCTGGCT 
GCGCTACTTT TCGCCGGGTG CGGCACCCAG GCGCCAGATC AAAGCGCAGC CTATATGCAG
GGTTCAGCGC AAGCTGACTC CGCCTTTTAC CTGCATCAGA TGCAGCAAAG CGCAGATGAT
AGCAAGACCA ACTGGCAATT ACTCGCCATT CATGCACTGC TGAAAGAAGG AAAAAGCCAG
CAGGCCGTCG AGTTGTTCAA TCAACTCCCG CAAAATCTGA ACGATGCCCA GCGTCGCGAA
CAATCTTTAT TAGCGGTAGA AATCAAACTG GCGCAAAAAG ATGTCGCAGG CGCGCAGGCC
TTGCTGGATA AACTAAAACC CGCCGACTTT GCGCCACATC AGCAAGCGCG TTACTGGCAG
GCGCAGATCG TTGCCAGCCA GGGACGCCCG TCGCTTACCT TGTTGCGGGC GTTAATCGCC
CAGGAACCGC TACTGGCGGC GAAAGATAAA CAAAAAAATA TCGACGCCAC CTGGCAGGCG
CTCTCCGCCA TGACGCCGGA TCAGGCCAGG ACGTTAGTTA TCAACGCTGA TGAAAATGTG
CTTCAGGGCT GGCTGGATCT GCAACGCGTC TGGTTTGACA ACCGCAACGA TCCAGACATG
CTGAAAGCCG GGATCGCCGA CTGGCAAAAA CGCTACCCGC AAAATCCGGG GGCGAAAATG
CTGCCGACGC AGCTCGTCAA TGTACAACGT TTTAAACCAG CTTCCACCAG CAAAATCGCT
CTGCTGCTGC CGCTGAACGG TCAGGCTGCC GTGTTTGGCC GTACCATCCA GCAAGGTTTC
GAAGCCGCGA AAAACCTCGG CACCCAGGCG GTAGAGATGC AGCCTGCCGC CGCGCCTGAC
GCGCCGGTCG AACCTGGCGT GGAGGAGACG CAACCACAAA TGACCAACGG CGTCGCCAGT
CCGTCGCAGG CCTCGGTGAG CGATCTGACT GATGACGCTC CAGCCCAGTC CGCTACGCCA
GTCAGCGCGC CACAGACTCC CCCTGCTACA GCAAGCGCGC CGGCGGATCC CTCCGCTGAA
TTAAAAATCT ATGATACCTC TTCCCAGCCG TTGGATCAGG TGCTCGCTCA GGTTCAGCAA
GACGGCGCCA GTATCGTGGT CGGGCCGCTG TTGAAAAACA ATGTGGAAGC GCTGATGAAA
AGCAACACGC CGCTCAACGT GCTGGCGCTC AACCAGCCGG AAACGGTACG TAGCTTCCCT
AATATCTGCT ATTTCGCGCT CTCTCCGGAA GATGAAGCCC GTGACGCGGC GCATCATATT
TATGACCAGG GCAAGCAGTC GCCGCTGCTG TTGATCCCAC GCAGCGCGCT TGGCGATCGC
GTGGCGAACG CCTTCACCCA GGAGTGGCAA AAACTGGGCG GCGGCATCGT GTTACAGCAA
AAATTCGGCT CCGTAGCCGA GCTGAAAATG GGCGTGAACG GCGGCGCGGG TATCGCGTTG
ACGGGCAGCC CGGTCGCCGC CAGCGTGCCT GCGCAGCCTG GCGTCACCAT TGGCGGTCTG
ACCATCCCTG CGCCGCCGAC CGACGCGCAA ATCACCAGCG GCGGACGCGT AGACGCGGTC
TATATTCTGG CTACGCCGGA AGAGATTGGC TTTATCAAAC CGATGATCGC CATGCGTAAC
GGCACCCAGA GCGGCGCGAC GCTGTATGCC AGCTCTCGCA GCGCGCAAGG CACCTCCGGC
CCCGACTTCC GTCTGGAAAT GGAGGGTTTG CAATACAGTG AAATTCCTAT GCTGGCAGGC
GGTAATATGC CGTTGATGCA GCAGGCGCTG AGCGCTGTAC ATAACGACTA TTCTCTGGCG
CGGATGTACG CCATGGGCGT GGATGCCTGG ACGCTGGCGA ACCACTTTTC GCAGATGCGT
CAGGTGCAGG GATTTGAGAT CAATGGTAAT ACCGGCGCAT TAACCGCCAG CCCGGATTGT
GTGATTAACA GGAAGTTATC ATGGCTCAAA TACCAGCAAG GGGAGATTGT TCCCGCCAGC
TAA
 
Protein sequence
MVPSTFSRLN AARALPVVLA ALLFAGCGTQ APDQSAAYMQ GSAQADSAFY LHQMQQSADD 
SKTNWQLLAI HALLKEGKSQ QAVELFNQLP QNLNDAQRRE QSLLAVEIKL AQKDVAGAQA
LLDKLKPADF APHQQARYWQ AQIVASQGRP SLTLLRALIA QEPLLAAKDK QKNIDATWQA
LSAMTPDQAR TLVINADENV LQGWLDLQRV WFDNRNDPDM LKAGIADWQK RYPQNPGAKM
LPTQLVNVQR FKPASTSKIA LLLPLNGQAA VFGRTIQQGF EAAKNLGTQA VEMQPAAAPD
APVEPGVEET QPQMTNGVAS PSQASVSDLT DDAPAQSATP VSAPQTPPAT ASAPADPSAE
LKIYDTSSQP LDQVLAQVQQ DGASIVVGPL LKNNVEALMK SNTPLNVLAL NQPETVRSFP
NICYFALSPE DEARDAAHHI YDQGKQSPLL LIPRSALGDR VANAFTQEWQ KLGGGIVLQQ
KFGSVAELKM GVNGGAGIAL TGSPVAASVP AQPGVTIGGL TIPAPPTDAQ ITSGGRVDAV
YILATPEEIG FIKPMIAMRN GTQSGATLYA SSRSAQGTSG PDFRLEMEGL QYSEIPMLAG
GNMPLMQQAL SAVHNDYSLA RMYAMGVDAW TLANHFSQMR QVQGFEINGN TGALTASPDC
VINRKLSWLK YQQGEIVPAS