Gene SNSL254_A3225 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A3225 
Symbol 
ID6482225 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp3141146 
End bp3141670 
Gene Length525 bp 
Protein Length174 aa 
Translation table11 
GC content53% 
IMG OID642738525 
Producthypothetical protein 
Protein accessionYP_002042247 
Protein GI194443939 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4795] Type II secretory pathway, component PulJ 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value0.0159896 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTGGCGA TGGCGATAGG TTCCATTTTA CTGCTTGGGT CCGCACGATT TTTACCGGCG 
CTACAGCGTG AAATCTGGCA CAACACGCGA CAGTTATCGC TGGAAGATGA AATCTGGCAG
CGAACCTATA CCGTAGCGAA GCATCTTCAA CGTGCGGGTT ACTGTCATGG TCACTGTATT
GGCGAAGGGT TACATCTTGC CGAACAGGGG CAATGCGTCA TCGTTCAGTG GGACGGGAAT
AATAACGGTG TCTGGGATAC CATACCGGCG AAAGAGGCCG ACCAGACCGG GTTTCGTGTG
AAGGATAACG TTCTGGAGAC ATTACGCGGA GCAACATCTT GCCAGGGTAA GGGATGGGAA
AAAATGACCG ATCCCAATAC GGTACTCATC ACGGCGTTTA CCGTTGAGCG CCGGGATATA
ACGGGATTCT CGCCAGTGCT CATGCTGCAT CTGCGCGGCG CCAGCAAAGC CGAGCCTCAG
ACGGTTATTG ACGCGCAATA CAGCGTAACG GGATTTAATC TGTGA
 
Protein sequence
MLAMAIGSIL LLGSARFLPA LQREIWHNTR QLSLEDEIWQ RTYTVAKHLQ RAGYCHGHCI 
GEGLHLAEQG QCVIVQWDGN NNGVWDTIPA KEADQTGFRV KDNVLETLRG ATSCQGKGWE
KMTDPNTVLI TAFTVERRDI TGFSPVLMLH LRGASKAEPQ TVIDAQYSVT GFNL