Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A2307 |
Symbol | |
ID | 6486625 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 2219934 |
End bp | 2222930 |
Gene Length | 2997 bp |
Protein Length | 998 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642737652 |
Product | mase1 domain family |
Protein accession | YP_002041394 |
Protein GI | 194446115 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3447] Predicted integral membrane sensor domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 72 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGTAATGA GTAAACCATC CCAACATGTT TTCGTTACCG TCCCCCACCC GCTATTGCGT CTGGTCAGTT TAGGCCTGGT CGCGTTTGTC TTTACGCTCT TTTCGCTCGT ATTATCGCGT GTCGGCACCC AACTCGCGCC GCTGTGGTTC CCCACCTCCA TTATGATGGT CGCGTTTTAC CGCCATGCGG GCCGTCTGTG GCCAGGGATC GCGGTCGCCT GCTCGCTCGG CAGCATCGGC GCCTCACTGA CTTTATTTCC TGCCGCCTCG CTTAACTTTA GCTGGACGGC AATAAATATT ATCGAGGCGG CCACTGGCGC GATACTGCTG CGAAAACTGC TCCCCAGCTA CAACCCCTTA CAAAATTTGA ATGACTGGTT TCGTCTGGCT ATCGGCAGCG CCGTGATTCC GCCGCTACTC GGCGGCCTGT TATTTTGGCT GATAGCGCCG GAAGCGGTCG CCTCGAAAGC GTTTCTGATT TGGGTATTAT CGGAAGCCAT CGGCGCGCTG ACGCTGGTGC CGTTAGGTTT ACTGTTTAAA CCACACTATC TGTTGCGTCA TCGCGACCCG CATCTGTTGC TGGAAACGCT ATTGACGCTG GTCATTACGC TGGCGCTAAG CTGGCTCGCT ATGCGCTATA TTCCGTGGCC GTTTACGTGC GTTATCGTCC TGTTGATGTG GAGTGCGGTG CGCCTGCCGC GAATGGAGGC GTTTTTAATT TTTTTAGCTA CCGTTATCGT GGTCTCGCTC ATGCTGGCCA ATGACCCCAC GCTGCTCGCC ACGCCGAAAA CCGACGTGAT GGTCAATATG CCGTGGCTGC CTTTTTTAAT GATCCTGCTG CCTGCCAATA TGATGACGAT GGTGATGTAC GCGTTTCGCA CGGAGCGTAA ACATATCACC GAGAGCGAAT CCCGCTTTCG CAACGCGATG GAGTATTCCG CCATTGGTAT GGCGCTGGTC GGTACGGAGG GTCAGTGGCT ACAGGTCAAT AAATCACTGA GCCATTTTCT TGGCTATAGC CAGGATGAAT TACGCACGAT GACATTTCAG CAATTGACCT GGCCGGAAGA CCTGAATAAT GACCTTGAAC AGCTAAACAT GCTGGTGCGC GGCGACATCA ACAGCTATTC CATGGAAAAA CGCTACTACA CCCGCAACGG CGATGTCGTC TGGGCGCTGC TGGCCGTCTC ACTGGTTCGT CATAAAGACA ATAAACCTCT CTATTTTATT GCTCAGATTG AAGACATTAA CGATCTCAAG CAAAGCGAGC AGGAAAACCA GCGGTTGATG GAGCGTATTA CACAGGCGAA CGAGGCGCTG TTTCAGGAAA AAGAACGGTT GCACATCACG CTTGACTCTA TCGGAGAAGC GGTGGTGTGT ATTGATGTCG CGATGAATAT CACCTTTATG AACCCGATCG CCGAGAAGAT GAGCGGCTGG CGGCAAGAGG ATGCTTTAGG CACGCCATTA TTAACGGTTC TGCGCATTAC GTCAGGTGAT AAGGGGCCGC TGCTGGAGGA TATTTATCGC GCCGACAGGT CGCGATCGGA CATGGAACAG GAGATAGTGC TCCATTGTCA TAACGGCGGC AGCTACGATA TTCATTACAG TATCACGCCG CTCAGTACGC TTGATGGCGA TAAGATTGGT TCGGTTCTGG TTATCCAGGA CGTTACCGAA TCACGAAAAA TGTTACGCCA GCTCAGCTAC AGCGCAACGC ATGACGCCCT CACCCAACTT GCCAACCGCG CCAGTTTTGA AAAACAGCTT CAACAGCGCC TGCAAACAAT ACAGGAATCG CCTCAACATC ATGCGCTGGT GTTTATCGAT CTGGACCGTT TTAAAGCGGT TAACGACAGC GCGGGACATG CCGCCGGCGA TGCCTTATTG CGCGAGCTCG CGTCACTGAT GCTCAGTATG CTTCGATCCG GCGATCTCCT GGCCCGTCTG GGTGGCGATG AGTTTGGCCT GTTGCTGCCG GATTGTAATA GTGACAGCGC GCGCTTTATC GCGACGCGGC TTATCAACGC CATTAATGAG TATCACTTTA TGTGGGAAGG ACGCCTGCAT CGGATCGGCG CCAGCGCCGG GATCACAATG ATAAATGAAC ATAACTGCCA GCTCACAGAG GTCGTGTCTC AGGCCGATAT TGCCTGCTAC GCCGCGAAAA ATAGCGGTCG AGGCCGTCTG ACCGTGTACG AACCGCAGCA CGCATTAACC TCCTCAAAGG GAATGATGCC GCTGGAAGAA CAGTGGCATA TGATTAAAAA TAACCACCTG CTGATGCTTG CCAGAAACGT CGCGCCGCCG CGTACGCCGG AGGCCACCAG CTTTTGGCTG GTCTCACTCA GGCTGTGGAC CAGCGAAGGG GAAGTGTTGG AAGAGCGCGC GTTCCGGGCA GGGTTAGCCG ACTCCGCGCT GCATCACGCG CTTGACCGAC GGGTATTCCA TGAGTTTTTC CACCATGCGG CGACCGCCGT CGCCAGCAAG GGATTAAGCG TTGCGCTGCC GCTGTCCGCC GCGGGATTAT ACAGCGCGAC CCTTATTGAT GAGCTGCTGG AACAACTGGA GCATAGTCCA CTGCCGCCAC GGTTATTACA CCTGATTATC CCGGCTGACG TTATCGTTAA GCAGGCGCAG ACCGCCGCTG CGACTCTGCG AAAACTGCGG CAACGCGGCT GCCAGGTGAT TCTCAGCCAT GTCGGGCGCG ATTTACAGCT GTTTAATTTA CTGCCCCTGC ATATCGTCGA TTATTTACTG CTGGATAGCG ACCTTATCGC CAACGTTCAT GAAAGTTTAA TGGATGAAAT GCTGACCTCG ATCATCCAGG GACACGCCCA GCATCTGGAC ATCAAAACGC TCGCCGGGCC GGTACAAAAC CCACAGGTGC TGGATACGCT CTCCCGTATT GGCGTGGATC TAATTTATGG CGACGCTATC GCCGAAGCGC AACCGCTGGA TTTGTTACTG AATACCAGCT ATTTCGCTAT CCATTGA
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Protein sequence | MVMSKPSQHV FVTVPHPLLR LVSLGLVAFV FTLFSLVLSR VGTQLAPLWF PTSIMMVAFY RHAGRLWPGI AVACSLGSIG ASLTLFPAAS LNFSWTAINI IEAATGAILL RKLLPSYNPL QNLNDWFRLA IGSAVIPPLL GGLLFWLIAP EAVASKAFLI WVLSEAIGAL TLVPLGLLFK PHYLLRHRDP HLLLETLLTL VITLALSWLA MRYIPWPFTC VIVLLMWSAV RLPRMEAFLI FLATVIVVSL MLANDPTLLA TPKTDVMVNM PWLPFLMILL PANMMTMVMY AFRTERKHIT ESESRFRNAM EYSAIGMALV GTEGQWLQVN KSLSHFLGYS QDELRTMTFQ QLTWPEDLNN DLEQLNMLVR GDINSYSMEK RYYTRNGDVV WALLAVSLVR HKDNKPLYFI AQIEDINDLK QSEQENQRLM ERITQANEAL FQEKERLHIT LDSIGEAVVC IDVAMNITFM NPIAEKMSGW RQEDALGTPL LTVLRITSGD KGPLLEDIYR ADRSRSDMEQ EIVLHCHNGG SYDIHYSITP LSTLDGDKIG SVLVIQDVTE SRKMLRQLSY SATHDALTQL ANRASFEKQL QQRLQTIQES PQHHALVFID LDRFKAVNDS AGHAAGDALL RELASLMLSM LRSGDLLARL GGDEFGLLLP DCNSDSARFI ATRLINAINE YHFMWEGRLH RIGASAGITM INEHNCQLTE VVSQADIACY AAKNSGRGRL TVYEPQHALT SSKGMMPLEE QWHMIKNNHL LMLARNVAPP RTPEATSFWL VSLRLWTSEG EVLEERAFRA GLADSALHHA LDRRVFHEFF HHAATAVASK GLSVALPLSA AGLYSATLID ELLEQLEHSP LPPRLLHLII PADVIVKQAQ TAAATLRKLR QRGCQVILSH VGRDLQLFNL LPLHIVDYLL LDSDLIANVH ESLMDEMLTS IIQGHAQHLD IKTLAGPVQN PQVLDTLSRI GVDLIYGDAI AEAQPLDLLL NTSYFAIH
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