Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A1831 |
Symbol | pyrF |
ID | 6485274 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 1796942 |
End bp | 1797679 |
Gene Length | 738 bp |
Protein Length | 245 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 642737206 |
Product | orotidine 5'-phosphate decarboxylase |
Protein accession | YP_002040958 |
Protein GI | 194444544 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0284] Orotidine-5'-phosphate decarboxylase |
TIGRFAM ID | [TIGR01740] orotidine 5'-phosphate decarboxylase, subfamily 1 |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00707369 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 1.7818899999999998e-27 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACGTTTA CTGCTTCATC TTCTTCCTGC GCTATTACTG AATCGCCTGT CGTTGTGGCG TTGGATTACC ATGAACGCGA TAAAGCCCTG GCGTTTGTCG ACAAAATCGA TCCTCGCGAT TGTCGCTTAA AAGTGGGCAA AGAGATGTTC ACGCTGTTTG GTCCACAACT CGTTCGGGAT CTCCAGCAAC GTGGGTTTGA TGTCTTTCTT GATCTAAAAT TTCATGATAT TCCCAACACC ACGGCCCGGG CAGTCGCCGC AGCGGCAGAC CTGGGCGTCT GGATGGTAAA CGTTCACGCG TCTGGCGGGG CGAGAATGAT GGCCGCAGCG CGCGACGCGC TGGCGCCATT CGGTAAAGAT GCGCCGTTGC TCATTGCCGT GACCGTGTTG ACCAGTATGG AAACCAGCGA TCTACACGAT CTGGGCGTGA CGTTGTCACC GGCGGAACAT GCGGAGCGGC TGGCGCGCCT GACGCAGCAA TGCGGGCTGG ATGGCGTGGT CTGTTCCGCT CAGGAAGCTG TCAGATTTAA ACAGGTCTTT GGCGCTGCAT TTAAGCTGGT GACGCCGGGC ATTCGGCCCG CAGGCAGCGA GGCAGGCGAC CAGCGACGCA TTATGACGCC CGAACAGGCA TTATCCGCCG GCGTCGACTA TATGGTGATT GGCCGCCCGG TTACGCAATC GGTAGATCCG GCGCAAACGC TGAAGGATAT TAACGCGTCA CTGAAACGGG AGGCATAA
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Protein sequence | MTFTASSSSC AITESPVVVA LDYHERDKAL AFVDKIDPRD CRLKVGKEMF TLFGPQLVRD LQQRGFDVFL DLKFHDIPNT TARAVAAAAD LGVWMVNVHA SGGARMMAAA RDALAPFGKD APLLIAVTVL TSMETSDLHD LGVTLSPAEH AERLARLTQQ CGLDGVVCSA QEAVRFKQVF GAAFKLVTPG IRPAGSEAGD QRRIMTPEQA LSAGVDYMVI GRPVTQSVDP AQTLKDINAS LKREA
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