| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A1617 |
|---|
| Symbol | |
|---|
| ID | 6486115 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 1582934 |
|---|
| End bp | 1583953 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642737003 |
|---|
| Product | putative dehydrogenase |
|---|
| Protein accession | YP_002040755 |
|---|
| Protein GI | 194443210 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 86 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGCA TCGTAATCGA AAAACCGAAT ACATTAACTA TCGAAACGCG CGCGCTTCCG
CAGCCTGCGC CGGGCGAAGT TCGCATTAAA GTGAAACTGG CGGGTATCTG CGGTTCCGAT
AGCCATATTT ATCGGGGACA TAATCCCTTT GCAAAATATC CCCGTGTCAT AGGCCATGAA
TTTTTCGGTG TCATCGACGC GGTAGGCGAC AACGTCAATC GCGACCGGAT AGGAGAACGG
GTATCCGTCG ATCCGGTGAT CAGTTGCGGG CATTGTTACC CTTGTTCAGT CGGTAAACCC
AATGTGTGTA CCTCGCTGGT GGTGCTGGGC GTGCATCGTG ACGGCGGTTT CAGCGAGTAT
GCGGTGGCGC CGGCCCGTAA TGCTCATCGC ATACCGGACA ACATCGCAGA TCATCATGCC
GTCATGGTTG AGCCGTTTAC CATTGCGGCA AATGTGACGG GGCAAGTGAA TCCGACCGAG
CAGGACGTGG CGCTTATCTA TGGCGCAGGC CCGATGGGAC TGACGACCGT ACAGGCGCTG
AAGGGGGTTT ATCAGGTTAA AACGGTCATA GTCGTTGATC GCATTGAAGA GCGTTTAGCA
ATGGCGAAGC AGAGCGGCGC TGACTGGACC CTCAATAATG GTCAACATTC ACTGGCGGAA
TTTCTACAGC AGAAGGCGCT AAAACCGACC TTGATTGTCG ATGCCGCCTG TCATCCCGCT
ATCCTGCAAG AGGCGATTAC CCTTGCATCG CCTGCGGCAC GCATTGTCCT GATGGGATTT
TCCAGCGACC CGTGTGAGAT TGTACAGCAG GGTATTACCG GAAAAGAGCT GGCTATTTAT
TCATCGCGTC TTAATGCCAA TAAATTCCCG GTCGTGATTG ACTGGCTGAG TAAAGGGCTT
ATTGATCCGG ATAAGCTGAT AACGCATACA TTTGATTATC AACATGTCAC TGACGCGATT
GAATTATTTG AAAAAGACCA GCGTCAATGC TGCAAAGTTT TACTCACTTT TGCGAAATAA
|
|---|
| Protein sequence | MKSIVIEKPN TLTIETRALP QPAPGEVRIK VKLAGICGSD SHIYRGHNPF AKYPRVIGHE
FFGVIDAVGD NVNRDRIGER VSVDPVISCG HCYPCSVGKP NVCTSLVVLG VHRDGGFSEY
AVAPARNAHR IPDNIADHHA VMVEPFTIAA NVTGQVNPTE QDVALIYGAG PMGLTTVQAL
KGVYQVKTVI VVDRIEERLA MAKQSGADWT LNNGQHSLAE FLQQKALKPT LIVDAACHPA
ILQEAITLAS PAARIVLMGF SSDPCEIVQQ GITGKELAIY SSRLNANKFP VVIDWLSKGL
IDPDKLITHT FDYQHVTDAI ELFEKDQRQC CKVLLTFAK
|
|---|
| |