| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A1550 |
|---|
| Symbol | sodC |
|---|
| ID | 6484045 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 1515490 |
|---|
| End bp | 1516011 |
|---|
| Gene Length | 522 bp |
|---|
| Protein Length | 173 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642736937 |
|---|
| Product | superoxide dismutase |
|---|
| Protein accession | YP_002040689 |
|---|
| Protein GI | 194446594 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2032] Cu/Zn superoxide dismutase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 78 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGAT TAAGTTTAGC GATGGTGACG CTGCTGGCCT GTGCGGGTGC GCAGGCCGCC
AGCGAGAAAG TAGAGATGAA TCTGGTGACG GCGCAAGGCG TAGGACAGTC TATCGGCACC
GTCGTCATCG ATGAAACCGA AGGCGGCTTA AAATTTACCC CACACCTTAA AGCGTTGCCG
CCGGGCGAGC ATGGTTTTCA CATTCATGCC AACGGTAGCT GCCAGCCCGC GATTAAAGAC
GGCAAAGCGG TTGCCGCAGA AGCCGCTGGT GGTCATCTGG ACCCACAAAA TACCGGCAAG
CATGAAGGGC CGGAAGGCCA GGGGCATCTG GGCGACCTCC CGGTGTTAGT CGTTAATAAT
GATGGTATCG CCACCGAACC GGTTACTGCG CCACGTCTGA AGTCTCTTGA TGAAGTGAAA
GATAAAGCGC TCATGATCCA TGTGGGCGGC GATAACATGT CCGATCAGCC GAAACCGCTC
GGCGGCGGCG GAATGCGTTA CGCCTGCGGC GTCATTAAAT AA
|
|---|
| Protein sequence | MKRLSLAMVT LLACAGAQAA SEKVEMNLVT AQGVGQSIGT VVIDETEGGL KFTPHLKALP
PGEHGFHIHA NGSCQPAIKD GKAVAAEAAG GHLDPQNTGK HEGPEGQGHL GDLPVLVVNN
DGIATEPVTA PRLKSLDEVK DKALMIHVGG DNMSDQPKPL GGGGMRYACG VIK
|
|---|
| |