| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A1363 |
|---|
| Symbol | |
|---|
| ID | 6483861 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 1343497 |
|---|
| End bp | 1344309 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642736758 |
|---|
| Product | ABC nickel/di-oligopepetide transporter, permease subunit |
|---|
| Protein accession | YP_002040513 |
|---|
| Protein GI | 194444818 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 0.0141464 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCTATA ATCCTGCTCC GACGTTGCTT CGTCTGATCC TCTCCGTTAC CTGTCTGCTG
TTTATTGCCG GATACGGTTA TGCCACGTTG AGCCAGCCGC CAGAGGTTAA TCTGCTTGCC
CGGCATCTGT CGCCTGATAT CCAGCACTGG TTTGGCACCG ATAATCTGGG GCGCGATGTA
TGGCTTCGTT GCTTTCAGGG GGCCTTCACC AGTTTACAAA TTGGCGTTGG CGCCGCGCTG
TGCAGCGGCG TTATCGCGTT AGTGATGGCG GCAGTGGCGC GCATTCATCC CCGGCTGGAC
CTCCTGATGC GGCTGATAAC CGATGCTATG CTCGCCATGC CGCATTTACT TTTGCTGATC
CTTATCTGTT TTACGCTCGG CGGCGGTAAA AGCGGCGTCA TTGCGGCCGT GGCGTTAACG
CACTGGCCCC GTCTGGCGCT GATTCTGCGC GCCGACGCGG AGCGGGTAGC GCAGAGTGAC
TACCTGACAT TGACCTATCG TCTGGGGCAT GGACACCTTT ATTGCTGGCG ATATCACTAT
TTTCCGGCGC TATTGCCGCA ATGGTTGACG GGAACGTTAT TGATGTTTCC TCATGCGGTA
TTGCACAGCG CGGCATTAAG TTTTCTGGGG TTTGGGCTGG CGCCGCATGA GCCTTCGCTG
GGGCTGTTGC TGGCGGATGC GTTACGGTTT ATTAGCCATG GTAACTGGTG GCTGGTGCTG
TTTCCCGGCC TAATGTTATT CACGCTGGTG ATGCTCTTCG ATCAGTTTGC GCGCGCCACT
CAGCGGCTGT GGCTAAGGAG TGACGTATGC TGA
|
|---|
| Protein sequence | MLYNPAPTLL RLILSVTCLL FIAGYGYATL SQPPEVNLLA RHLSPDIQHW FGTDNLGRDV
WLRCFQGAFT SLQIGVGAAL CSGVIALVMA AVARIHPRLD LLMRLITDAM LAMPHLLLLI
LICFTLGGGK SGVIAAVALT HWPRLALILR ADAERVAQSD YLTLTYRLGH GHLYCWRYHY
FPALLPQWLT GTLLMFPHAV LHSAALSFLG FGLAPHEPSL GLLLADALRF ISHGNWWLVL
FPGLMLFTLV MLFDQFARAT QRLWLRSDVC
|
|---|
| |