Gene SNSL254_A1245 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A1245 
SymbolmdoC 
ID6482270 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand- 
Start bp1236778 
End bp1237932 
Gene Length1155 bp 
Protein Length384 aa 
Translation table11 
GC content46% 
IMG OID642736645 
Productglucans biosynthesis protein 
Protein accessionYP_002040402 
Protein GI194442322 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones75 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCTCTG TACCCGCGCC GCGTGAATAT TTTCTTGACT CTATCCGCGC ATGGCTGATG 
TTGTTAGGGA TTCCCTTTCA TATCTCGTTG ATCTATTCCA CTCACAGTTG GCATGTCAAT 
AGCGCCGCGC CATCGTGGTG GCTAACCCTG TTTAACGATT TTATCCACGC TTTTCGTATG 
CAGGTGTTTT TTGTTATTTC TGGTTATTTT TCGTACATGT TATTTTTACG TTATCCATTA 
AAACACTGGT GGAAAGTACG GGTAGAACGT GTGGGTATTC CCATGCTTAC CGCAATCCCT 
TTGCTTACCT TGCCGCAATT TATCCTGTTG CAATATGTCA AAGAGAAAAC AGAGAACTGG 
CCTACACTCT CTGCCTATGA AAAATATAAT ACGTTAGCGT GGGAACTCAT TTCACATCTG 
TGGTTTTTAC TGGTGCTGGT GATATTAACC ACCGTCAGCA TCGGGATTTT TACCTGGTTC 
CAAAAAAGGC AGGAAACAAG CAAGCCTCGT CCCGCCGCTA TTTCGCTGGC CAAACTTTCT 
CTTATTTTTT TCCTGCTGGG GGTGGCTTAC GCTGCTATCA GGCGCATTAT ATTCATCGTA 
TATCCGGCAA TCCTCAGTGA CGGCATGTTC AATTTTATTG TGATGCAAAC GCTATTTTAT 
GTGCCGTTTT TTATTCTCGG CGCGTTGGCC TTCATTCACC CCGATCTGAA AGTGCGCTTC 
ACCACGCCCT CACGCGGATG CACTTTAGGC GCTGCCGTTG CTTTTATCGC GTATCTGCTG 
AATCAACGTT ATGGGAGCGG CGACGCCTGG ATGTACGAAA CCGAATCCGT GATTACGATG 
GTAATGGGGC TATGGATGGT GAACGTGGTA TTTTCACTGG GGCATCGCTT GTTAAACTTT 
CAGTCCGCGC GTGTCACCTA TTTCGTGAAT GCTTCGCTGT TTATCTATCT GGTGCATCAT 
CCCTTAACGC TTTTCTTTGG CGCGTATATT ACGCCGCATA TCTCCTCCAA CCTGATCGGG 
TTCTTGTGCG GGCTGATATT TGTTATGGGT ATTGCGTTAA TTCTGTATGA AATTCATTTA 
CGCATCCCGC TCCTGAAATT TCTCTTTTCA GGTAAACCGC CGGTAAAACG AGAAAGTCGC 
GCCACGATCG GGTAG
 
Protein sequence
MSSVPAPREY FLDSIRAWLM LLGIPFHISL IYSTHSWHVN SAAPSWWLTL FNDFIHAFRM 
QVFFVISGYF SYMLFLRYPL KHWWKVRVER VGIPMLTAIP LLTLPQFILL QYVKEKTENW 
PTLSAYEKYN TLAWELISHL WFLLVLVILT TVSIGIFTWF QKRQETSKPR PAAISLAKLS 
LIFFLLGVAY AAIRRIIFIV YPAILSDGMF NFIVMQTLFY VPFFILGALA FIHPDLKVRF 
TTPSRGCTLG AAVAFIAYLL NQRYGSGDAW MYETESVITM VMGLWMVNVV FSLGHRLLNF 
QSARVTYFVN ASLFIYLVHH PLTLFFGAYI TPHISSNLIG FLCGLIFVMG IALILYEIHL 
RIPLLKFLFS GKPPVKRESR ATIG