Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A0788 |
Symbol | |
ID | 6482696 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 798536 |
End bp | 799327 |
Gene Length | 792 bp |
Protein Length | 263 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 642736200 |
Product | endonuclease VIII |
Protein accession | YP_002039966 |
Protein GI | 194446665 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0266] Formamidopyrimidine-DNA glycosylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 54 |
Fosmid unclonability p-value | 0.0698035 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGAAG GCCCGGAAAT TCGTCGTGCG GCGGATAATC TGGAGGCGGC AATCAAAGGC AAACCCTTAA CCGATGTCTG GTTTGCCTTT GCACAGTTAA AACCGTATGA ATCGCAGCTT ACCGGTCAAC TTGTTACCCG GATAGAGACG CGGGGAAAAG CGTTATTGAC CCACTTTTCA AATGGCCTGA CGCTCTACAG CCACAACCAA CTCTATGGCG TATGGCGGGT GATCGATACT GGTGAAATAC CGCAGACCAC GCGTATATTG CGCGTCAGGC TACAAACGGC GGATAAAACT ATTCTGCTTT ATAGCGCGTC TGATATCGAA ATGCTGACAG CAGAGCAGCT CACGACGCAC CCTTTTTTAC AGCGAGTCGG TCCGGATGTG TTGGACGCGC GTCTTACTCC GGAAGAGGTT AAAGCTCGAT TGCTGTCGCC GCGTTTTCGC AACCGACAAT TTTCCGGACT GTTGCTGGAT CAGGCCTTTC TGGCGGGATT GGGGAATTAT CTGCGCGTTG AAATCCTCTG GCAGGTAGGG TTAACCGGAC AGCATAAAGC GAAAGATCTC AACGAGGCGC AACTGAATGC GCTTTCTCAC GCGCTGTTGG ATATTCCGCG CCTTTCCTAC ACTACTCGCG GTCAGGCGGA TGAGAACAAG CATCATGGCG CACTGTTTCG CTTTAAGGTT TTCCACCGTG ACGGCGAAGT GTGCGAGCGG TGCGGCGGCA TTATTGAAAA GACAACACTG TCCTCACGCC CGTTTTACTG GTGCCCGCAT TGCCAGAAAT AG
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Protein sequence | MPEGPEIRRA ADNLEAAIKG KPLTDVWFAF AQLKPYESQL TGQLVTRIET RGKALLTHFS NGLTLYSHNQ LYGVWRVIDT GEIPQTTRIL RVRLQTADKT ILLYSASDIE MLTAEQLTTH PFLQRVGPDV LDARLTPEEV KARLLSPRFR NRQFSGLLLD QAFLAGLGNY LRVEILWQVG LTGQHKAKDL NEAQLNALSH ALLDIPRLSY TTRGQADENK HHGALFRFKV FHRDGEVCER CGGIIEKTTL SSRPFYWCPH CQK
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