| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A0118 |
|---|
| Symbol | sgrR |
|---|
| ID | 6485916 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 128632 |
|---|
| End bp | 130290 |
|---|
| Gene Length | 1659 bp |
|---|
| Protein Length | 552 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642735559 |
|---|
| Product | transcriptional regulator SgrR |
|---|
| Protein accession | YP_002039341 |
|---|
| Protein GI | 194442990 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4533] ABC-type uncharacterized transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.217334 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 0.271533 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTCAG GTCGCCTGCA ACAACAATTT ATCCGTCTCT GGCAATGTTG TGACGGTAAA
ACGCAAGACA CCACGCTTAA TGAGCTGGCG GATCTGCTGA ACTGTTCGCG TCGCCATATG
CGTACGCTGC TAAATACGAT GCAGGCGCGC GGTTGGCTAA CATGGGAAGC TGAGGTTGGA
CGCGGAAAGC GTTCGCGTCT GACGTTCCTG TATACCGGAC TGGCGCTGCA ACAGCAGCGG
GCGGAAGACC TGCTGGAACA AGATCGAATC GATCAACTGG TACAACTGGT CGGCGATAAA
AGCGCTGTCA GGCAAATGCT GATTTCCCAT CTGGGACGCA GCTTCCGCCA GGGGCGGCAT
ATTCTGCGGG TTCTTTACTA TCGTCCGATG CACAATCTCC TGCCGGGAAC CGCATTACGT
CGCTCGGAAA CCCATATTGC CCGGCAAATT TTCAGTTCGC TCACGCGGGT AAATGAGGAA
AACGGGGAAC TGGAAGCGGA CATTGCCCAC CACTGGCAGC AAATTTCCCC TTTACTGTGG
CGCTTCTACC TGCGCCCCGG CATTCATTTT CATCATGGCC GCGAGCTGGA GATGGAAGAT
GTCATCACCT CGCTGACGCG TATCAATACG CTTCCGCTTT ACTCGCACAT CACAAAGATA
GACTCCCCTA CCGCGTGGAC GCTGGATATT CATCTTTCCC AGCCGGATCG CTGGTTGCCG
TGGCTGCTGG GCCAGGTCCC GGCGATGATT TTGCCGCGGG AGTGGGAAAC GCTGGCTAAT
TTCGCCAGCC ACCCTATCGG CACCGGGCCT TATGCCGTGC GGCGTAATAC GCCAAACCAG
CTCAAGATAC TCGCCTTTGA TGATTACTTC GGCTATCGGG CGTTGATAGA CGAAGTGAAC
GTCTGGGTAC TGCCGGATAT CAGTGAAGAA CCGGCCTGCG GCTTGATGCT GGAAGGGCCG
ATACAAGGCG GTGAAAAAGC GATAGAAAGC CGACTGGAAG AGGGGTGCTA TTACCTACTA
TTCGACGCCA GAACGCCGCG CGGCGCACAT CCGCAGGTCA GAGAATGGGT AAGCCACGTC
CTCTCCCCCA CCAATTTACT CTATCATGCC GATGAACCGC TACAGCAGCT CTGGTTCCCG
GCCTATGGGC TTTTACCGCG CTGGCATCAC GCCCGTCCAG GCCCGGGCGA AAAACCCGCC
GGGCTGGAAA CCCTCACGCT GACCTTCTAT CGCGAACACA TTGAGCACCG GGTTATCGCC
CGTATCATGA GCGCGCTTCT GGCTGAACAT CAGGTGCATC TGCATATTCA GGAGATCGAC
TACGATCAAT GGCACGCCGG CGAGATCGAA AGCGATATCT GGCTCAATAG CGCTAACTTT
ACGCTGCCGC TGGATTTCTC GCTGTTCGCG CACTTGTGCG AAGTACCGCT CTTGCAGAAC
TGCATTCCGC GCGACTGGCA GGACGACGCC GCGCAGTGGC GCGCTGGCGA GATGAACCTG
GCGAACTGGT GCCAGCAACT GCTGGTCAAC AAAGCGATTG TGCCGTTGAT CCACCACTGG
CTGATTATCC AGGGACAACG CAGTATGCGC GGGCTGCGCA TGAATACCCT CGGCTGGTTT
GATTTTAAAT CGGCGTGGTT TGCGCCGCCA GATCCTTAA
|
|---|
| Protein sequence | MPSGRLQQQF IRLWQCCDGK TQDTTLNELA DLLNCSRRHM RTLLNTMQAR GWLTWEAEVG
RGKRSRLTFL YTGLALQQQR AEDLLEQDRI DQLVQLVGDK SAVRQMLISH LGRSFRQGRH
ILRVLYYRPM HNLLPGTALR RSETHIARQI FSSLTRVNEE NGELEADIAH HWQQISPLLW
RFYLRPGIHF HHGRELEMED VITSLTRINT LPLYSHITKI DSPTAWTLDI HLSQPDRWLP
WLLGQVPAMI LPREWETLAN FASHPIGTGP YAVRRNTPNQ LKILAFDDYF GYRALIDEVN
VWVLPDISEE PACGLMLEGP IQGGEKAIES RLEEGCYYLL FDARTPRGAH PQVREWVSHV
LSPTNLLYHA DEPLQQLWFP AYGLLPRWHH ARPGPGEKPA GLETLTLTFY REHIEHRVIA
RIMSALLAEH QVHLHIQEID YDQWHAGEIE SDIWLNSANF TLPLDFSLFA HLCEVPLLQN
CIPRDWQDDA AQWRAGEMNL ANWCQQLLVN KAIVPLIHHW LIIQGQRSMR GLRMNTLGWF
DFKSAWFAPP DP
|
|---|
| |