| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SAG1941 |
|---|
| Symbol | cpdB |
|---|
| ID | 1014751 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Streptococcus agalactiae 2603V/R |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004116 |
|---|
| Strand | + |
|---|
| Start bp | 1928918 |
|---|
| End bp | 1931320 |
|---|
| Gene Length | 2403 bp |
|---|
| Protein Length | 800 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637317108 |
|---|
| Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein |
|---|
| Protein accession | NP_688929 |
|---|
| Protein GI | 22538078 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
|---|
| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain
[TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0574689 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAAC ATTATTTTTC AAAAAGCGTA TTCGCTTTAA CTGTCTTAAC AGCTACAGCA
ACAAGTGGTT TAGCTGTTCA AGCAGAAGAC ATTGTTACAA CACCAAGTTC AACCTCTACA
AAGGTTGAAT CAACTACCCC CACTAGCACA ATTGCAGAGG AAAAGTCAAA CGTTACTTCT
ACTCCAACTG CAATAACTGA TGCTTCAACA GCCACAAGCA CAAATACCAC TACCAATAAC
CAAAATCCAC AGCCTGTTGC CACAGAAGCC ACAACTAGTG ATCTCAAACC TATTGAAGGT
GAAAAAGTTG ACCTTCGCAT CATGTCAACC ACAGACCTAC ACACCAATTT AGTTAACTAT
GATTATTATC AAGATAAAGA ATCTCAAAAA ATAGGGTTAG CAAAAACTGC TGTCCTTATT
GAAGAAGCAA AAAAAGAAAA TCCTAATACC GTCTTAGTTG ATAACGGAGA TGTCATTCAA
GGGACACCTT TAGGAACTTA TAAAGCAATC GTTAAACCTG TCGCAGAAAA TGAAGAACAT
CCTATGTACC AAGCCATGAA TGCTCTTGGT TATGATGCAT CAACACTAGG TAATCATGAG
TTTAATTACG GTTTAGATTA CCTCAAAAAA ATCATTGCTA CAGCCAACCT TCCAATCCTC
AACGCAAATG TTTTGGATTT CAAAACACAT CAACCAGTTT TTAAAACTTA TGACATCATT
ACTAAAACCT TCAAAGATTC AACAGGAAGA GCTGTTGCAC TAAATATTGG GATTACAGGA
ATTGTACCTC CTCAAATCTT AAACTGGGAC AAGGCTAACC TAGAGGGAAA GGTTATTGTC
AAAGATTCAG TTAAAGCAAT CGAAGAAATC GTTCCTACTA TGCGTGCTAA AGGAGCAGAT
GTCATTCTCG TTTTATCACA CTCTGGCATT GGAGATGATC GATATGAAGA AGGTGAAGAA
AACGTTGGCT ATCAAATTGC CAGCATCAAG GGAGTGGATG CCGTTGTTAC GGGACACTCA
CACGCTGAAT TTCCATCAGG TAACGGTACT GGCTTCTATG AAAAATACAC TGGAGTTGAT
GGTATCAATG GAAAAATAAA TGGAACACCT GTTACAATGG CAGGCAAGTA CGGGGATCAT
CTTGGTATTA TTGATTTAGG ACTTAGTTAT ACTAATGGAA AATGGCAAGT CTCCGAAAGT
AGTGCTAAAA TCCGTAAAAT TGATATGAAC TCAACAACTG CTGACGAGCG TATCATTGCA
TTGGCTAAGG AAGCACACGA TGGCACTATC AACTATGTTC GCCAACAAGT AGGTACAACA
ACTGCGCCAA TTACAAGTTA CTTTGCACTA GTTAAAGATG ACCCTTCAGT TCAAATTGTT
AACAACGCTC AACGTTGGTA CGTTGCAAAT GAATTGAAAG GAACACCTGA GGCAAATTTA
CCACTTCTAT CTGCTGCAGC ACCATTTAAA GCTGGAACAC GCGGCGATGC TACCGCATAT
ACTGATATTC CAGCTGGACC TGTTGCAATT AAAAACGTAG CTGATCTTTA CCTTTATGAT
AATGTTACTG CACTTTTAAA AGTGACCGGA GCAGACTTAC GTGAATGGTT AGAAATGTCC
GCTGGTCAAT TTAACCAAAT TGACCCTAAC AATAAAGCAC CACAAAATAT TATCAATACC
GAATATCGTA CCTATAATTT TGACGTTATT GACGGCTTGA CTTATAAATT TGATATTACA
CAACCTAATA AATACAATAA AGATGGAAAA GTTGTTAATA GTCAAGCTAG TCGAGTACGC
GATTTAATGT ACAATGGTAA GCCTGTTGCA GACAAACAAG AGTTTATGAT TGTGACCAAT
AACTACCGTG CTAGTGGTAC CTTCCCTGGG GCTAAAAATG CCACAATGAA CCGTTTGCTG
AACTTAGAAA ATCGCCAAAC TATTATCAAC TATATTATTT CAGAGAAAAC CATCAATCCT
ACAGCTGATA ATAACTGGGG CTTCACAGAG TCTATTAAAG ACCTTGATTT ACGATTCCAA
ACAGCCGATA AAGCTAAAAA TCTTGTTACT AATAGCAAGG ATATTCAGTA TATCGCTAGT
TCTACCAAAG ATGAAGGATT TGGTGATTAT CGATTTGTCT ATACTGAACA AGAAAAAGTA
GACCTTACTG AGCCATCACA TCAAGAAAAG TTAAGCCAAA TAGAAAAACA AAAAATTCAC
CACATGGTTG CAACTGCTTA TACAAAAGCA AAAGCTTCTC CAAATATTAC AGGCACTGTC
TATACACAAC AGAAAGAAAA AACATTACCT AAAACTGGAC AAGAAAAACA ATCTTATCTG
GCTTTCTTTG GTGTCGCAAT ACTTGGACTC GTGGGAAGTT TACTTAAAAA GAAACAAATA
TAG
|
|---|
| Protein sequence | MSKHYFSKSV FALTVLTATA TSGLAVQAED IVTTPSSTST KVESTTPTST IAEEKSNVTS
TPTAITDAST ATSTNTTTNN QNPQPVATEA TTSDLKPIEG EKVDLRIMST TDLHTNLVNY
DYYQDKESQK IGLAKTAVLI EEAKKENPNT VLVDNGDVIQ GTPLGTYKAI VKPVAENEEH
PMYQAMNALG YDASTLGNHE FNYGLDYLKK IIATANLPIL NANVLDFKTH QPVFKTYDII
TKTFKDSTGR AVALNIGITG IVPPQILNWD KANLEGKVIV KDSVKAIEEI VPTMRAKGAD
VILVLSHSGI GDDRYEEGEE NVGYQIASIK GVDAVVTGHS HAEFPSGNGT GFYEKYTGVD
GINGKINGTP VTMAGKYGDH LGIIDLGLSY TNGKWQVSES SAKIRKIDMN STTADERIIA
LAKEAHDGTI NYVRQQVGTT TAPITSYFAL VKDDPSVQIV NNAQRWYVAN ELKGTPEANL
PLLSAAAPFK AGTRGDATAY TDIPAGPVAI KNVADLYLYD NVTALLKVTG ADLREWLEMS
AGQFNQIDPN NKAPQNIINT EYRTYNFDVI DGLTYKFDIT QPNKYNKDGK VVNSQASRVR
DLMYNGKPVA DKQEFMIVTN NYRASGTFPG AKNATMNRLL NLENRQTIIN YIISEKTINP
TADNNWGFTE SIKDLDLRFQ TADKAKNLVT NSKDIQYIAS STKDEGFGDY RFVYTEQEKV
DLTEPSHQEK LSQIEKQKIH HMVATAYTKA KASPNITGTV YTQQKEKTLP KTGQEKQSYL
AFFGVAILGL VGSLLKKKQI
|
|---|
| |