Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rxyl_2456 |
Symbol | gabD2 |
ID | 4115298 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rubrobacter xylanophilus DSM 9941 |
Kingdom | Bacteria |
Replicon accession | NC_008148 |
Strand | - |
Start bp | 2471050 |
End bp | 2472675 |
Gene Length | 1626 bp |
Protein Length | 541 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 638037236 |
Product | succinic semialdehyde dehydrogenase |
Protein accession | YP_645195 |
Protein GI | 108805258 |
COG category | [C] Energy production and conversion |
COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.31424 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGGACGC AGGGGGCGGC GCGGGACGGC CGGGCGTACC CGACGACCGC GGAGCTTATG GCCGCCACCG GGCGGGTCGG CCGCGGGCTG CTCGAGGCCC TCGCCGGGGA GGCCGCCGGC GGGGCGGGGG GGAGGCTCGA GGTGGAGTGC CCCTTCAACG GGGAGGTCTT CGCCCGGGTG CCGCGCTGCG ACCCCGGGGA GGTCGCCGGC GCCTTCCGCC GGGCCCGCGC GGCGCAGGAG CGGTGGGGGC GGCTCTCCTT CCGGGAGCGC GGGAGGATCT TCCTCCGCTT CCACGACGAG GTGCTGCGCA GGAGGGACGA GATCCTGGAC CTCGTCCAGC TCGAGACCGG CAAGGCCCGC CTGCACGTCT TCGAGGAGGT GATGGACGTC GCCATCGCCT CCCGCTACTA CGCCCACGCC GCGGAGCGCC ACCTGAGGAG CCGCCGCAGG CGCGGCGTCG TCCCGCTCCT CACCTCCGCC GTGCACCACC GGCACCCGAA GGGCGTCGTC GGGTTTATAG CGCCGTGGAA CTACCCGCTC ACCCTCTCCA TCTCCGACGC CGTGCCCGCG CTCATGGCCG GCAACGCCGC CGTCATAAAG CCGGACCGCA AGACCCCGCT CACCGCCCTG TGGCTCGTGC GGCTGCTCAG GGAGTGCGGG CTGCCGCGCG AGCTCGTGCA GGTCGTCTGC GGGCCCGGGG GCGAGCTCGG CCCCCCCATC GTCGAGAACG CCGACTTCGT CATGTTCACC GGCAGCACCG CTACCGGCCG GGAGGTCGCC GCCGCGGCCG CCCGGCGGCT CGTGGGCTTC TCGCTCGAGC TCGGCGGCAA GAACCCCATG GTCGTCTTCG AGGACGCCGA CCTCGACCGG GCCGTGGAGG GGGCGGTCAG GGCCTGCTTC TCCAGCGCCG GGCAGCTGTG CATGTCCGCC GAGCGGCTCT ACGTGCACGG CGCGGTGTAT GGCGAGTTCC TCTCCCGCTT CGCCGAAAGA GCGGGGCGGG TGAGGCTGGG CGCGGGGCTC CACTACGGCT TCGAGATGGG CTCCCTCATC TCCGCCGGGC AGCTCGAGCG CGTCTCCTCC CACGTGGGGG AGGCCGTGGA GCGGGGGGCA GAGGTGCTCG CCGGGGGGCG GGCGCGCCCG GACATAGGCC CCTACTTCTA CGAGCCGACC GTGCTCCGGG GGGTGGACGA GGGGGCGCGC CTCTTCTCCC AGGAGACCTT CGGCCCCGTG GTCTCAGTCT TCCCCTTCCG CACCCCGGAG GAGGCCGTGA GGCTGGCCAA CGCCACCCCC TACGGCCTCA ACGCGAGCGT CTGGACCCGC GACCTGCGCC GGGGGGCCGA GGTCGCCCGG CGCATCGAGG CCGGCACGGT CAACATAAAC GAGGCCTACG CCCCCGCCTG GGCCTCGACC GACGCCCCCA TGGGCGGCTT CAAGGACTCC GGTCTGGGGA GGAGGCACGG CGAGGAGGGG ATCGTCAAGT ACACCGAGTC GCAGGCCGTG GTGACCCAGC GGCTCCTGCC GCTCGTGGCC CCGGTCTTCG GGATGGGGGG CGAGACCTAC GCCGGGCTGA TGTCCCTGTC CCTGCGACTC ATGCGGCGCC TGCCCGGGGT GAGGGGGCGC TGGTAG
|
Protein sequence | MRTQGAARDG RAYPTTAELM AATGRVGRGL LEALAGEAAG GAGGRLEVEC PFNGEVFARV PRCDPGEVAG AFRRARAAQE RWGRLSFRER GRIFLRFHDE VLRRRDEILD LVQLETGKAR LHVFEEVMDV AIASRYYAHA AERHLRSRRR RGVVPLLTSA VHHRHPKGVV GFIAPWNYPL TLSISDAVPA LMAGNAAVIK PDRKTPLTAL WLVRLLRECG LPRELVQVVC GPGGELGPPI VENADFVMFT GSTATGREVA AAAARRLVGF SLELGGKNPM VVFEDADLDR AVEGAVRACF SSAGQLCMSA ERLYVHGAVY GEFLSRFAER AGRVRLGAGL HYGFEMGSLI SAGQLERVSS HVGEAVERGA EVLAGGRARP DIGPYFYEPT VLRGVDEGAR LFSQETFGPV VSVFPFRTPE EAVRLANATP YGLNASVWTR DLRRGAEVAR RIEAGTVNIN EAYAPAWAST DAPMGGFKDS GLGRRHGEEG IVKYTESQAV VTQRLLPLVA PVFGMGGETY AGLMSLSLRL MRRLPGVRGR W
|
| |