| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1889 |
|---|
| Symbol | |
|---|
| ID | 4115567 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | + |
|---|
| Start bp | 1912464 |
|---|
| End bp | 1913507 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638036677 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_644651 |
|---|
| Protein GI | 108804714 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGGATA CCGGATCGAA GGCCATGACG GCGAGACAGT CACATAGAAC CTTCCCGCCG
GAGACGCTAC GCTCAAGCCT AAGTCACCTC TTGATGGCCA GAGAGAGCGG AGTGTTGACC
GCCCTTGCCA TGCTGGTCTT CGCAGGGAGC TTCGTCGCGC CGGGGCTCTG GGCGCCGCAG
AACATGCTGA ACGTCGGCCA ACAGGTAGCG CAGATCGGAA TCATGGCCGT CGGGATGACT
TTCGTCATCA TCACCGCGCA GATAGATCTG AGCGTGGGTT CCATCTACGC TCTCGCAGCC
GTGGTCACGG GTCTGCTCCT TACGCAGGGC TCTCCGGCGT GGGTCGCGTG CCTCGGAGGA
TTAGCGGTGG GCTTCTGTGC CGGGCTAGTC AATGGGCTCA CCACCGTCTA CCTGCACATA
CCGTCTTTCA TCGTCACACT CGGAACGCTC AGCGCTTTTC GCGGTCTGAC CTTGCTGCTC
ACCAACGGTT CCCCGATCTC GCTCGATGCG AACCAGGCGA ACGTGCAGAC CTTCTCGCTC
CTCGGCCAGG GCCTACTATT CAGCGTCGTG CCCATGGAGT TCGCCTTCCT CATCCTGACC
TTCATCTTCG GCTATGTGTT GCTAGCCTGG ACCAAGTACG GCTTCTACGT GTACGCGGTG
GGCGGCAGTG CCGAGGCGGC CCGGTTATGC GGCATCAACG TGGCTCGCGT GCGCCTCACC
AGCTTCGTGA TACTCGGCAC CCTCAGCGCC TTCTCCGGCA TCCTTGGTCT ATCGTTCTTG
AACTACGTAC AGGGGGTCAC GGGGCAGGGT CTCGAGCTCG TCGTGATTTC GGCCGTGATC
ATCGGTGGGA CGGCTCTCTT CGGCGGCTCC GGCACGATGT TGGGCACCCT TATCGGGGTT
GCTTTGATCG GGGTCCTACA AAACATACTC GTGCTGAGCG GCCTGTCGTC GTTCTGGCAG
ATCCTGGTTG TGGGGGTGGT GGTCATCCTG GCGGTGGCGC TGGATTCCTA CCTTCGGCGC
AGACGAAAGA TGAAGGGGCC TTAA
|
|---|
| Protein sequence | MKDTGSKAMT ARQSHRTFPP ETLRSSLSHL LMARESGVLT ALAMLVFAGS FVAPGLWAPQ
NMLNVGQQVA QIGIMAVGMT FVIITAQIDL SVGSIYALAA VVTGLLLTQG SPAWVACLGG
LAVGFCAGLV NGLTTVYLHI PSFIVTLGTL SAFRGLTLLL TNGSPISLDA NQANVQTFSL
LGQGLLFSVV PMEFAFLILT FIFGYVLLAW TKYGFYVYAV GGSAEAARLC GINVARVRLT
SFVILGTLSA FSGILGLSFL NYVQGVTGQG LELVVISAVI IGGTALFGGS GTMLGTLIGV
ALIGVLQNIL VLSGLSSFWQ ILVVGVVVIL AVALDSYLRR RRKMKGP
|
|---|
| |