| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1354 |
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| Symbol | |
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| ID | 4117173 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rubrobacter xylanophilus DSM 9941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008148 |
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| Strand | + |
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| Start bp | 1382557 |
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| End bp | 1384023 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 638036147 |
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| Product | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
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| Protein accession | YP_644129 |
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| Protein GI | 108804192 |
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| COG category | [C] Energy production and conversion
[J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain
[COG0822] NifU homolog involved in Fe-S cluster formation |
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| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[TIGR02000] Fe-S cluster assembly protein NifU |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGAGC GCTACGGTCC GCGCGTCATA GAGCACCTGG TGAACCCCCG CAACGCGGGC
GAGGTCGGCG GGCCCTCCGG GGTGGGGGAG GCCGGGAACG CCGCCTGCGG GGACCAGGTG
CGCTTCACCC TCCGCGTGGG GGGGGATCTT CGCCTCCAGG AGGTGCGTTA CCGGGCCTAC
GGCTGCGCCG CCTGCATAGC CGCCGGCTCG GCGCTCGCGG AGCTCGCCGA GGGCAGGTCC
ATCACCGGGG CGGCCCAGAT CTCGCGGGGG GACATCCAGG AGGCGCTCGG CGGGCCGCTA
CCGCCCGGCA AGGAGCACGG CGCGACCCTC GCGCTCGACG CGCTGCACAG GGCCTTCGAG
GACTACTGGA GCCGGCAGGG GGACGCGCTG CTCGGCGGGG AGGGCCTCGG GGACGGGAGC
GGCGGGCGGC GGGGCGTCGT CGCCGCGATG AGCGGCGGGG TGGACTCCGC GGTCACCGCG
CTGCTGCTCA AGGAGCGGGG CTACGAGGTG GTGGCGGTGA CCTTCCGGCT GCACGACGGG
GAGCCGGGCA GCCGGTCCTG CTGCTCGCCG GACACCGTGC TCTTCGCCAG GGAGACCGCC
CACGGCCTGG GCATCCCCCA CTTCACCCTC AACCTCAGGG AGCTCTTCGA CCGGCGCGTC
ATGCGGGACT TCGTCGGCTC GTACGCCGCC GGCAGGACCC CGAACCCCTG CGTGGCCTGC
AACGCCCACG TCAAGTTCCA CGCGGCGGCC TTCCTCGCCG ACAGGCTCGG CCTGCGGCAC
GTGGCGACCG GCCACTACGC CCGGGTGGGG GAGGGGCCGT GCCTGGAGCG CCCGGAGGAT
GGGCGCAAGG ACCAGACCTA CGTGCTCTGG CCCGTCCCGC CGCGCCTGCT CGGGCGGACC
ATCTTCCCGC TCGGGGACTA CCGCAAGAGC GAGGTCCGCA GGATCGCCGA GGAGCGCGGG
CTCGCCGTGG CCCGCACGCC CGAGAGCCAG GACATCTGCT TCATCCCGGA CGGGGACTAC
CGCTCCTTCG TCCGGCGCCG GGTGAGGAGC GAGCCCGGGG AGATCGTGGA CCGGCAGGGG
CGCGTGCTGG GTCGCCACGC GGGGGTGGTG GACTTCACCG TGGGGCAGCG GCGGGGGCTC
GGGATCTCCG CTCCCACCCC GCTGTACGTC ACCGAGGTCC GCCCCCGGAG CCGGCAGGTC
GTGGTGGGGA GCAGGCGGGA GCTCGAGGTG CGCCGGATGC TCGTGCGCGG CGCGAACTGG
TTTCTCGACC CGCGGGAGGC CGCGCTCGTG CAGGTGCGCT ACAACGGCGA GCCGGTGCCC
TGCGAGCTGG AGGAGGGCGC GGGCGGCTGG GAGGTCGCGC TGCTCGAGCC GGTCTTCGGG
GTGGCGCCCG GGCAGTCGGC GGTCTTCTAC ACCCGGGACG GCGCAAAGGT GGTGGGCGGC
GGCATCATCG CCCGGCGGGA CGCTTGA
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| Protein sequence | MPERYGPRVI EHLVNPRNAG EVGGPSGVGE AGNAACGDQV RFTLRVGGDL RLQEVRYRAY
GCAACIAAGS ALAELAEGRS ITGAAQISRG DIQEALGGPL PPGKEHGATL ALDALHRAFE
DYWSRQGDAL LGGEGLGDGS GGRRGVVAAM SGGVDSAVTA LLLKERGYEV VAVTFRLHDG
EPGSRSCCSP DTVLFARETA HGLGIPHFTL NLRELFDRRV MRDFVGSYAA GRTPNPCVAC
NAHVKFHAAA FLADRLGLRH VATGHYARVG EGPCLERPED GRKDQTYVLW PVPPRLLGRT
IFPLGDYRKS EVRRIAEERG LAVARTPESQ DICFIPDGDY RSFVRRRVRS EPGEIVDRQG
RVLGRHAGVV DFTVGQRRGL GISAPTPLYV TEVRPRSRQV VVGSRRELEV RRMLVRGANW
FLDPREAALV QVRYNGEPVP CELEEGAGGW EVALLEPVFG VAPGQSAVFY TRDGAKVVGG
GIIARRDA
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