| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1271 |
|---|
| Symbol | |
|---|
| ID | 4115997 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 1294122 |
|---|
| End bp | 1295558 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 638036059 |
|---|
| Product | cation transporter |
|---|
| Protein accession | YP_644047 |
|---|
| Protein GI | 108804110 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0168] Trk-type K+ transport systems, membrane components |
|---|
| TIGRFAM ID | [TIGR00933] potassium uptake protein, TrkH family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0599313 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCACCCTA GGATCATAGC CAACGTGCTC GGGGCCGTGG TGGCCGCCAC CGGGGCGGCC
ATGCTCATCC CGGCCGCCCT CTCCCGCCTG GTCTCGGACG GCTACGCCGG GGCGTTCTTT
CTCCCCGCCG CCGCGGCCCT CCTGGCGGGG ACGCTGACCT TCGCCCTCTC CCGCGGGCGC
GGCGCCTACC TCTCCATCCG CGACGTCTTC CTGATGGTGG TGCTGGGCTG GGTGGCGGTG
GCGATCGTGG GGTCCGGGCC GTTCGTGCTC TCCGGGCTCA TGAGCCCCGT GGAGGCGTTC
TTCAACTCCA TGGCCGGCTT CACCACCACC GGCGTCTCCA CAGTAAAGAG CGCGCCGCCC
TCCCTCCTGC TCTGGAGGAG CATGAGCCAG TGGGTCGGGG GGATCGGGAT AGTGCTGCTC
TTCGTCGCCG TCGCCCCGCT CGTGGGCTTC GGCGCCGCCC AGCTCTACTC CGCGGAGGCC
GCAACCCCCC TCACCGAGCG CCTTACCCCC CGCATCCGGG ACACGGCGAA GGTTCTCGTC
TACATCTACG CGGCGCTCAC CGCGGGGCTA GCGGCGGCGC TCCTGGTGGC GGGCATGGGC
CTCTTCGACG CGGTGAACCA CGCGCTCACC ACCGTCGCCA CCGGCGGCTA CTCCACCCGC
CCGGGCTCCA TAGCGGCCTT CGACTCGCCG GCGGTGGAGC TGGTCCTCGC CGCCGGCATG
ATCCTCTCCG GGACCAACTT CGCCCTGTAC TTCCAGGCCG TCCGGGGGCG CCTGAGGGAG
GCGCTGACCA ACGCCGAGTA CCTGACGTAC CTGGCCCTGA TCCTCTCGGC CACCGCCGTC
ATGGCCGCCT CCCTGTACGC CTTCGACTAC CAGGACTCGC CCCTGCGGGC CCTCCGGCTC
GCGCTCTTCC AGAGCGCGAG CCTCACCACC GGCACCGGCT TCAGCACCGC CGACTGGGAC
TCCTGGGACC CGCTCTCCCA GGGCCTGCTG ATGGTCCTGA TGGCCATAGG GGGCTGCGCG
GGCTCGACGA GCGGCGGCAT CAAGGTGGTG CGGGCCCTCC TGCTCGCCAA GAACGCCCTC
CAGGACGCCT TCAGGATGGT CCACCCGCGG GCCGTGACCG CCCTGAAGCT GGGCCGGAAG
GTGGTCCCCG AGCGGCTGCG CGCGAGCCTC CTGGGCTTCT TCTTCGTCTA CGTGGCAACG
CTCGTCGCCG GAACCCTGCT CATGGCGCTC CACCAGGTGC CGCTGGGCGC CGCCTTCGGC
TCGGCGTTCG CCTGCCTGAA CATCACGGGG GTGGCGCCGG GCCCGGCGGG CGACCCTGCG
TTCTACGCGG GCCTGCCGGC CACCGCCCAG CTGGTGCTGT GCCTGCTGAT GCTGCTGGGC
CGGCTGGAGC TCTTCACCGT CCTGGTCATC CTCACCCCCG CCTTCTGGCG GGGCTAG
|
|---|
| Protein sequence | MHPRIIANVL GAVVAATGAA MLIPAALSRL VSDGYAGAFF LPAAAALLAG TLTFALSRGR
GAYLSIRDVF LMVVLGWVAV AIVGSGPFVL SGLMSPVEAF FNSMAGFTTT GVSTVKSAPP
SLLLWRSMSQ WVGGIGIVLL FVAVAPLVGF GAAQLYSAEA ATPLTERLTP RIRDTAKVLV
YIYAALTAGL AAALLVAGMG LFDAVNHALT TVATGGYSTR PGSIAAFDSP AVELVLAAGM
ILSGTNFALY FQAVRGRLRE ALTNAEYLTY LALILSATAV MAASLYAFDY QDSPLRALRL
ALFQSASLTT GTGFSTADWD SWDPLSQGLL MVLMAIGGCA GSTSGGIKVV RALLLAKNAL
QDAFRMVHPR AVTALKLGRK VVPERLRASL LGFFFVYVAT LVAGTLLMAL HQVPLGAAFG
SAFACLNITG VAPGPAGDPA FYAGLPATAQ LVLCLLMLLG RLELFTVLVI LTPAFWRG
|
|---|
| |