| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1163 |
|---|
| Symbol | |
|---|
| ID | 4116847 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 1188871 |
|---|
| End bp | 1189644 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 638035953 |
|---|
| Product | RNA polymerase, sigma 28 subunit |
|---|
| Protein accession | YP_643941 |
|---|
| Protein GI | 108804004 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGACCGCAG CAACGAGACA GGCACCATCC CGCAGAGCAC GGGCCGCAGA GCTCGTCGCG
GCCTACCGCG ACGGGGGCGA CCGCCGGGCG CTGGAGCGCC TGTTCGCCTC CCACGGGGCC
CTGCTCAAGA GCATCGCGCG CCGCTACGCC GGCTCCTCGG GCGAGCCCTA CGAGGACTTG
CTGCAGGCGG GCTACGTGGG GCTCATGAAG GCCGTGAACG GCTACGACCC CTCCTCCGGG
GCCGCCTTCT CCTCCTACGC CTACTCGATG ATGGAGGGCG AGATCCGGCA CCACCTCCGG
GACTCGGGGC TGGTGCGCCG CCCCCGGTGG GCCTCCGGCC TCTACGCCCG CGTCTCGGAG
GCCACCGCCC ATCTCACCCG CGAGCTGGGC CGCCCCCCGC TCCCCGAGGA GGTCGCCCGC
GAGGCGAACA TCACGCCCGA GGGCATCCGC GAGCTGATGA AGGTCTATCT GGCCACCAGC
GTCTCCTCGC TCGACGAGGA GCCCGACCTC GGCGCCATAC GCAGCCTCCA CTACGAGAGC
TTCTCGCTCC CGGTGGAGGA CCGCATCTGG CTCGAGGAGG CGCTCGAGTC CCTCAGCGAG
CTGCAGCGCA AGGCGGTGTA CCTGTTCTTC TACAAAGACC TCTCGCAGAC GGAGATAGGG
CGCCGCCTCG GGCTGCCCCA GCGGAAGGTC TCCCGGCTGG TGGCCTCGGC GGTGAAGAGC
CTCGCCCGGA AGCTCGGACC GGAGGGCGAG CAAGACTACA GCCCGGCAGC CTGA
|
|---|
| Protein sequence | MTAATRQAPS RRARAAELVA AYRDGGDRRA LERLFASHGA LLKSIARRYA GSSGEPYEDL
LQAGYVGLMK AVNGYDPSSG AAFSSYAYSM MEGEIRHHLR DSGLVRRPRW ASGLYARVSE
ATAHLTRELG RPPLPEEVAR EANITPEGIR ELMKVYLATS VSSLDEEPDL GAIRSLHYES
FSLPVEDRIW LEEALESLSE LQRKAVYLFF YKDLSQTEIG RRLGLPQRKV SRLVASAVKS
LARKLGPEGE QDYSPAA
|
|---|
| |