Gene Rxyl_0900 details

Gene Information

• Locus tag: Rxyl_0900
• ID: 4116723
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rubrobacter xylanophilus DSM 9941
• Kingdom: Bacteria
• Replicon accession: NC_008148
• Strand: +
• Start bp: 939752
• End bp: 940327
• Gene Length: 576 bp
• Protein Length: 191 aa
• Translation table: 11
• GC content: 74%
• IMG OID: 638035684
• Product: ECF subfamily RNA polymerase sigma-24 factor
• Protein accession: YP_643679
• Protein GI: 108803742
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.581812
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTTGTGA GAGGCGGAGA GCAGAGCGGG CGGTCGGAGG GACCCGGGCT CGCGGAGAGG 
ATCGCCTGCG GGGATGCGCT CGCGGTCCGG GAGCTCGTGG AGCGCCACTA CGCGGAGCTC 
TACCGCTACG CGTTCGCCGC GCTGCGCCAC CGGGCGGCCT CCGAGGACGC CGTCCACGAC 
GCCCTCGTCC GCGCGCTGGA GGCCCTCGGG AGGTACCCCG AGGAGCGCAT CAGGGGGATG 
TCCCTGCGGC CCTGGCTCTA CAGGATCACC CTCAACACCG TGCGCAACCG GCTGCGGGCG 
CGCGGCAGGG AGGCCCGCCT CGAAGACCCG GGGGCTCTGG CCGAGCCGCG GGGAGACCCC 
GAGGGCGTGA TGGACGCGCT GGCAGCCCTC CGGCTACTCC CCGAGCGGCA GCGGGTGGCC 
GTGAGCCTGC GCTACCTGCA GGATCTGCCG TACGCGGAGA TCTCCGCCGC CACCGGCTGG 
CCCGAGGGGA CCGTCAAGAC CCTCGTGCGC CGCGGGCTCA TCCGCCTGCG GGCGGCGATG 
GAGCAGGAGG AGAGGAGTAG AGGAGGAGAG CGATGA 

 

Protein sequence

MVVRGGEQSG RSEGPGLAER IACGDALAVR ELVERHYAEL YRYAFAALRH RAASEDAVHD 
ALVRALEALG RYPEERIRGM SLRPWLYRIT LNTVRNRLRA RGREARLEDP GALAEPRGDP 
EGVMDALAAL RLLPERQRVA VSLRYLQDLP YAEISAATGW PEGTVKTLVR RGLIRLRAAM 
EQEERSRGGE R