Gene Rxyl_0580 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRxyl_0580 
Symbol 
ID4116546 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRubrobacter xylanophilus DSM 9941 
KingdomBacteria 
Replicon accessionNC_008148 
Strand+ 
Start bp609626 
End bp610591 
Gene Length966 bp 
Protein Length321 aa 
Translation table11 
GC content65% 
IMG OID638035366 
Productsubstrate-binding region of ABC-type glycine betaine transport system 
Protein accessionYP_643364 
Protein GI108803427 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1732] Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAACA ATACTCGACC GATTCAAGCT GTGCTGGTGC TGCTAACTCC GTTCGCGCTC 
GCGATAGTTT TTCTCGTCGC CTGCGGCAAC GTGGGCGAGA GCGGCGGCTC CGGCCCCGGC 
GCCGGGGAAG GGGGAGGCCC CGCGATCACC GTGGGCTCCA AGAACTTCAC CGAGCAGTAC 
ATCCTCGGCA ACATGTACGC CCTGGCGCTC GAGGACGCCG GCTTCAAGGT GGAGCGGCGG 
CTGAACCTCG GCAGCGAGCA GATCGCCGAC AGGGCCCTCC AGAACGGGCA GATAGACCTC 
TATCCCGAGT ACACCGGCAC CGCGCTGGCC GCGGTGCTCG ACTACGAGGG CGACCCGGCG 
CAGCTGGACA CCCCGGAGCA GACCTACCAG AGGGCGAAGG AGCTCTACGC CGGGCGCGAT 
CCGGCCGACA CCATGCTCAG GCCCGCGCCC TTCAACAACA CCTACGCCAT CTTCGTGCGC 
CGGGAGGCCG CCAAGCGCTA CGACCTGAGG ACGCTCGAGG ATCTCGCCGA GGCCTCCCCG 
AACCTGGTGT TCGTCTCCTT CTCCGAGTTT CAGCACCGCG AGGACAACTT TAAGAACATG 
AAAGAGAACT ATAACTTCGA CTTCAAGGAC GTGGAGATCG TCAACAGCAT CGGGCTCCGC 
TACCAGGGGG TGCTGCAGGG CGAGGGGGAC GTCGGGGTGG GCTTCACCAC CGACGGCCAG 
CTGGCCTCCG ACCGGCTGGT GGTGCTCGAG GACCCCAAGA GCATCTGGCC CTTCTACCAG 
CCCGCCCCCG TGGTGCGCAC CGAGGTGCTC GAGAAGAACC CGAAGATCCG GGAGGTCCTC 
AACGAGGTCT CGGCCAGCCT CGACGTGGAG ACCATGCGAA GGCTCAACGG CCGGGTGGAC 
CTCCAGAAGG AGGACCCGGA GGACGTGGCC CGGGAGTATC TGGAGCGGGA GGGTCTCATT 
AAGTGA
 
Protein sequence
MKNNTRPIQA VLVLLTPFAL AIVFLVACGN VGESGGSGPG AGEGGGPAIT VGSKNFTEQY 
ILGNMYALAL EDAGFKVERR LNLGSEQIAD RALQNGQIDL YPEYTGTALA AVLDYEGDPA 
QLDTPEQTYQ RAKELYAGRD PADTMLRPAP FNNTYAIFVR REAAKRYDLR TLEDLAEASP 
NLVFVSFSEF QHREDNFKNM KENYNFDFKD VEIVNSIGLR YQGVLQGEGD VGVGFTTDGQ 
LASDRLVVLE DPKSIWPFYQ PAPVVRTEVL EKNPKIREVL NEVSASLDVE TMRRLNGRVD 
LQKEDPEDVA REYLEREGLI K