| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_3087 |
|---|
| Symbol | valS |
|---|
| ID | 5083174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | - |
|---|
| Start bp | 3160028 |
|---|
| End bp | 3162991 |
|---|
| Gene Length | 2964 bp |
|---|
| Protein Length | 987 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640484659 |
|---|
| Product | valyl-tRNA synthetase |
|---|
| Protein accession | YP_001169276 |
|---|
| Protein GI | 146279117 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0525] Valyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.705018 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.448197 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGATGG ACAAGACCTT CAACGCCGCC GAGGCCGAGG CCCGGCTTTA CGACACGTGG
GAGAAGGCGG GCGCCTTCCG CGCGGGCGCC AATGCCTCGC GGCCCGAGAC CTTCTGCATC
ATGATCCCGC CGCCGAACGT GACGGGGTCG CTGCACATGG GTCACGCCTT CAACAACACG
CTGCAGGACA TCCTGACGCG CTGGCACCGG ATGCGTGGCT TCGACACGCT CTGGCAACCG
GGGCAGGACC ATGCCGGCAT CGCCACCCAG ATGGTGGTCG AACGGGAACT CGCGAAAGCC
GGCCAGCCGG GCCGCCGCGA GATGGGCCGT GAGGCGTTCC TGTCGAAGGT CTGGGAGTGG
AAGGAGCAGT CGGGCGGCAC GATCGTCAAC CAGCTCAAGC GCCTCGGCGC CTCGTGCGAC
TGGTCGCGCA ACGCCTTCAC GATGGATGCC AACTTCCAGC GCGCCGTGCT GAAGGTGTTC
GTGGACCTCT ACGAAAAGGG CTTCATCTAC CGCGGCAAGC GGCTGGTGAA CTGGGATCCC
CACTTCGAGA CGGCGATTTC GGATCTGGAA GTCGAGCAGG TCGAGGTGAA CGGCAGCATG
TGGCGCCTGC GCTACCCGCT GGCCGATGGC GCGACCTACC GCCACCCGGT CGCCTTCGAC
GAGGAGGGCC GCGCGACCGA GTGGGAGGAG CGCGACTATC TGACCGTCGC CACCACCCGC
CCCGAGACGA TGCTGGGCGA CACCGGCATC GCGGTGAACC CCGCCGACGA ACGCTACGCC
CACCTGATCG GCAAGGAGGT CATCCTGCCG CTGGTCGGCC GCCGCATCCC GATCGTGGCT
GATGAGTATG CCGACCCGAC CAAGGGCACC GGCGCGGTAA AGATCACGCC CGCGCACGAC
TTCAACGACT GGGGCGTGGG CCAGCGCACC GGGCTGCGCG CGATCAACGT GATGAGCGGC
CGCGCGGCCA TGTTCCTCGC CGAGAACGCC GACTTCCTCG AAGGCTGCAC GCCGTCCGAG
GCGGCGCTGG CGCTGGATGG CCTCGACCGT TACGAGGCGC GCAAGCGCAT CGTGGCGCTG
GCCGAGGAGC AGGGCTGGCT CGACGGCATC GACCAGGACA AGCACATGGT CCCGCACGGC
GACCGATCGA AGGTCGCGAT CGAGCCGATG CTGACCGACC AGTGGTTCGT GGACACGGCC
AAGATCGTCC AGCCCGCCAT CGACGCCGTG CGCGACGGCC GGACCGAGAT CCTGCCCGAG
CGCGACGCCA AGACCTACTT CCACTGGCTC GAGAACATCG AGCCCTGGTG CATCTCGCGC
CAGCTCTGGT GGGGCCACCA GATCCCGGTC TGGTATGGCC TCGACATCTG GCCCGCGCGC
TTCGACGACG ACGGCGACGA CACGCTCGAC GAGGTCGAGA TCTTCGAGTT GCTGGAAGAC
GGCGCCTTCA ACCATGCCGA GCCTACGCAT CATTGCGCCT TCGACTTCGA CGCGGTGTCG
GAGAAGTTCC TCGACGATCT CGCCTCGCTG CCGGCGCCGC TGAACCATGC GCGCGTGGTC
GAGGTGGCAA ACCGCGCCGA GGCCGTCGAC CGGCTGGCGC AGGCGCTCGC CGACTACAAC
GTCAGCGAGG ACCCGACCCA TCTCGTCTAT CCGGTCTGGC GCGACCCGGA CGTGCTCGAC
ACCTGGTTCT CCTCCGGCCT CTGGCCGATC GGCACGCTGG GCTGGCCCGA GGATACGGAC
GAGCTTCGCC GCTATTTCCC GACCAACGTG CTGATCACCG GCTTTGACAT CATCTTCTTC
TGGGTCGCCC GGATGATGAT GATGCAGCTT GCCGTGGTGA ACGAGGTCCC CTTCAAGACC
GTCTATGTCC ACGCCCTCGT GCGGGACGAG AAGGGCAAGA AGATGTCGAA GTCGCTCGGC
AACGTGCTTG ACCCGCTGGA ACTGATCGAC GAGTTCGGGG CCGATGCCGT GCGCTTCACC
CTGACGGCGA TGGCCGCCAT GGGCCGCGAC CTCAAGCTGT CCACCGCGCG CATCCAGGGC
TATCGCAACT TCGGCACCAA GCTCTGGAAC GCCTGCCGCT TCGCCGAGAT GAACGGCGTG
TGGGAGGGTC ACGCAACCCA GGCCGCCCCG CCGCAGGCCA CCGCCACCGT GAACCGCTGG
ATCATCGGCG AAACGGGGCG CGTGCGCGAA GACGTGGACG CGGCACTGGC GGCCTATCGG
TTCGACGTGG CGGCCAATGC GCTTTATGCC TTCGTCTGGG GCAAGGTCTG CGACTGGTAT
GTCGAGTTTT CCAAGCCGCT CTTCGACACC GAGGCGGCCG CCGAGACACG CGCCACGATG
GCCTGGGTGC TCGACCAGTG CATGATCCTG CTGCACCCGA TCATGCCCTT CGTGACCGAG
GAGCTGTGGG CCACCACCGG CAGCCGCTCG AAGATGCTGG TCCACACCGA CTGGCCGTCC
TTCGGCGCCG AACTGGTCGA TCCCGCGGCC GATCGCGAGA TGAGCTGGGT GATCTCGCTC
ATCGAAGAGA TCCGCTCGGC CCGGGCCCAG GTGCGCGTGC CGGCGGGGCT CAAGCTGCCG
GTGCTGCAAC TGGCGCTGGA CGAGGCCGGA CGTGCGGCCC TGGCCCGCAA CGAGGCCCTC
ATCCTGCGCC TCGCCCGCCT CGAGGGTTTC ACCGAGGCCG CGACGGCACC CAAAGGGGCC
CTGACCATTG CCGTCGAAGG CGGCAGCTTC GCCATCCCGC TCGAGGGCGT GATCGACATC
GCCGCCGAAC GCACCCGCCT CGCCAGGACG CTCGAAAAGC TCGAGAAGGA TCTCGGCGGC
CTGCGTGGGC GCCTCAACAA TCCCGCCTTC GTCGCCTCCG CGCCGGAAGA GGTGGTGGAC
GAGGCCCGCA CCCGGCTTGA ACAGGGCGAG GAAGAGGCGG CGAAACTGTC CGCGGCCCTC
GCCCGCCTGT CCGAAATCGA CTGA
|
|---|
| Protein sequence | MPMDKTFNAA EAEARLYDTW EKAGAFRAGA NASRPETFCI MIPPPNVTGS LHMGHAFNNT
LQDILTRWHR MRGFDTLWQP GQDHAGIATQ MVVERELAKA GQPGRREMGR EAFLSKVWEW
KEQSGGTIVN QLKRLGASCD WSRNAFTMDA NFQRAVLKVF VDLYEKGFIY RGKRLVNWDP
HFETAISDLE VEQVEVNGSM WRLRYPLADG ATYRHPVAFD EEGRATEWEE RDYLTVATTR
PETMLGDTGI AVNPADERYA HLIGKEVILP LVGRRIPIVA DEYADPTKGT GAVKITPAHD
FNDWGVGQRT GLRAINVMSG RAAMFLAENA DFLEGCTPSE AALALDGLDR YEARKRIVAL
AEEQGWLDGI DQDKHMVPHG DRSKVAIEPM LTDQWFVDTA KIVQPAIDAV RDGRTEILPE
RDAKTYFHWL ENIEPWCISR QLWWGHQIPV WYGLDIWPAR FDDDGDDTLD EVEIFELLED
GAFNHAEPTH HCAFDFDAVS EKFLDDLASL PAPLNHARVV EVANRAEAVD RLAQALADYN
VSEDPTHLVY PVWRDPDVLD TWFSSGLWPI GTLGWPEDTD ELRRYFPTNV LITGFDIIFF
WVARMMMMQL AVVNEVPFKT VYVHALVRDE KGKKMSKSLG NVLDPLELID EFGADAVRFT
LTAMAAMGRD LKLSTARIQG YRNFGTKLWN ACRFAEMNGV WEGHATQAAP PQATATVNRW
IIGETGRVRE DVDAALAAYR FDVAANALYA FVWGKVCDWY VEFSKPLFDT EAAAETRATM
AWVLDQCMIL LHPIMPFVTE ELWATTGSRS KMLVHTDWPS FGAELVDPAA DREMSWVISL
IEEIRSARAQ VRVPAGLKLP VLQLALDEAG RAALARNEAL ILRLARLEGF TEAATAPKGA
LTIAVEGGSF AIPLEGVIDI AAERTRLART LEKLEKDLGG LRGRLNNPAF VASAPEEVVD
EARTRLEQGE EEAAKLSAAL ARLSEID
|
|---|
| |