Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rsph17025_2588 |
Symbol | |
ID | 5085203 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides ATCC 17025 |
Kingdom | Bacteria |
Replicon accession | NC_009428 |
Strand | + |
Start bp | 2626569 |
End bp | 2628473 |
Gene Length | 1905 bp |
Protein Length | 634 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640484152 |
Product | Ig family protein |
Protein accession | YP_001168781 |
Protein GI | 146278622 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.65153 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0000026367 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGCATCCCG GCCTCGGCCT CGGGCTGACC GCGCAGCGTG GGCGCGCGGC ATCCTCCTCC ATCACGGCCA CTTCCGCACC CACCTTCGCC CCGCTCTCAC CCGGAGTGAC CATTTCAAGC GTCTGGACGG CAGGAACCTA CGCTTCGACC GCCGGCACGA TCTCCGCCGT GGTGGAGACG TTCGTTCGCA ACTCCGAGGC GGTGACGGCT TCAACCGTTG CCGCGGAAGG TGACGTGATC TCTGTCACGG TCCTGGTGAC GGACAGTGCG GGCAACCAGC GGACGTTCTC GTGCGGGCCG CAGGCGGTGC CCTACGCGGC GCCCATGATC TCGGGTCTGC AGGATCTGAG CGCATCCTGT GGCGCGAGCA TCAGCATCAA CGCCGCGGTC AGCGCGAGCG GCTCGGGCCT CGTCTACTCG CTGACCGGCC CGGAGTGGCT CTCGATCAAC CCCGCCACCG GCATGATCAC CGGCGCGGCG CCGGAGGCCC ATGTGACCAC CGCGGCGACG GTGACCGTCA CCAATCCCGG CGGAAGCGCG AGCGACACGT TCGCGGTGGA GGTGGTGGCG GCCCCTACGG TCACTCCGGC CGCCAACAAC ATCCTCGTCA TCAACGGAGA CAGCCGCACG GCCTCGGGCA TGACCACACT GCGGGCGCAT GGATCGGCGG CCGAGACCAA CCCGCTCGAA AATGCCGGAG TCTCGTTCGC GGCGGGATGG CAGGCCCACG CGCTGGCCGC GCTGTCGCAT CGTGTCGTGA TCCCGAAGGG CGGCAACTTC GCCATCGGGG CCGAGACGAC CACCCAGATC GCGGCGCGGG CGGAGCGGGA TGCGGCGCAG GCGGCGGGCT TCGGCGCCGC GGTCTGCGTC TTCCTGGGCG GGGTCAACGA CACGACCCTG ACCAGCGCCC AGAGCATCGC CAACTACATC ACGATCTTCA ACGCATGGAC GGCGCAGGGC ATCCGGCTCG TGGTCTGCAA CGAGGCGCCG CGTGACAACC TTCTCGGAGC CAACCTCACC GCGCATCAGG AGCGCCGCGC CTGGCTCGAG GATCCGCAGC GCGCCGTGGA CTGGCCGGGA TATGTCAGCG TCAACAGCTG GGACGCGCTG GCCGATCCGG CGGATCCGAC CAAATGGGCG CCGGGCCTGT CCTACGACGG GCTGCATCCG ACCTACGCGG GGTCCAGGAT CCTCGGGGAG ACCATCGCGG CGGCGCTGGC CCCGCTCTAT CCCGACCCGG TCTTCCCGAG TCGGCTGGAC CTGCCGACCT CGGCCGAGGG ATGTCTCAAC ACCGCGCCCA TGATGACCGG CGCGACGGGG ACCATCCAGG CCACTCCGGC GGCTGTCATC ACCGGGGACG TGGCGACGGG ATGGATCCTG TCGGCCGAGC GGGTGCAGGA CGGGCTGTCC ATCGCGGCCG GCAAAGACAC CGACCCGGAC GGCTATGATG AGCAGGTCAT CACCCTGAGC GGGGCGGCCA GCGTCTCGGC CGCCTGCGGC GCGCGCTTTG CCAATGCGAT GACGGCCGCC GTCAGCGCCC TGTCGCCCGG TGACGTGATC CGCCTCCATG GGCGGCTGCG CATCGACGCG GGCCACACGG GGCTGCTGGG CGTGAGGATG GGAGGCTTCA TCCAGGGGGG CGGCCTCGAC ACCCCGGCCG ACGCCTTCAA GCTGCGCTAC TTCGGGGCCT TCGCCGGGCT CTGGAACGCC GCCGGGACCA ACGTCATGGA TGGATCAGCG GTGGAACTGG AGATCATGTC TCAGGATCTC GTGATCCCGG CGAACTGGGC GGCGGCCACC GGGCGGCAGG GCTTCGCGCA GGTCAACATC CTCTGCATGG GCGGCAACCT GCCCGTGAGC GCGACCGTGC GCCTGTCCCG GCTGGGGGTC AGACGGGTGT TGTAG
|
Protein sequence | MHPGLGLGLT AQRGRAASSS ITATSAPTFA PLSPGVTISS VWTAGTYAST AGTISAVVET FVRNSEAVTA STVAAEGDVI SVTVLVTDSA GNQRTFSCGP QAVPYAAPMI SGLQDLSASC GASISINAAV SASGSGLVYS LTGPEWLSIN PATGMITGAA PEAHVTTAAT VTVTNPGGSA SDTFAVEVVA APTVTPAANN ILVINGDSRT ASGMTTLRAH GSAAETNPLE NAGVSFAAGW QAHALAALSH RVVIPKGGNF AIGAETTTQI AARAERDAAQ AAGFGAAVCV FLGGVNDTTL TSAQSIANYI TIFNAWTAQG IRLVVCNEAP RDNLLGANLT AHQERRAWLE DPQRAVDWPG YVSVNSWDAL ADPADPTKWA PGLSYDGLHP TYAGSRILGE TIAAALAPLY PDPVFPSRLD LPTSAEGCLN TAPMMTGATG TIQATPAAVI TGDVATGWIL SAERVQDGLS IAAGKDTDPD GYDEQVITLS GAASVSAACG ARFANAMTAA VSALSPGDVI RLHGRLRIDA GHTGLLGVRM GGFIQGGGLD TPADAFKLRY FGAFAGLWNA AGTNVMDGSA VELEIMSQDL VIPANWAAAT GRQGFAQVNI LCMGGNLPVS ATVRLSRLGV RRVL
|
| |