Gene Rru_A1604 details

Gene Information

• Locus tag: Rru_A1604
• ID: 3835021
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodospirillum rubrum ATCC 11170
• Kingdom: Bacteria
• Replicon accession: NC_007643
• Strand: +
• Start bp: 1891159
• End bp: 1893225
• Gene Length: 2067 bp
• Protein Length: 688 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 637825696
• Product: Alpha amylase, catalytic region
• Protein accession: YP_426691
• Protein GI: 83592939
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0366] Glycosidases

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTTCCG CCCTCCCGCC TTTTCGCCCC TCTCTCGTCT CCGACCCGTT GTCGGCAAGG 
CAAGACCCCT CCCTTCCCGG CATTCTCCCG GTCAGCGCGC CGATCCTGAT CGAGGATATC 
GGGCCGCGGG TGAGCGACGG CCGCTATCCG ATCAAGCGGG TCTTGGGCGA GGGCGTGGTG 
GTCAGCGCGG CGGTTTTTCG CGATGGCCAT GTGCCGCTGG CCGCCGCCCT GCTGTGGCGC 
CGCTCCCCCC GGCCCGGGGA GCCCGCCGGG GGGCGGGGGG CGTGGCACGA GGTGCCCCTG 
ACCCAGATCG AACCGGGGCT GGCGCGCTGG CGGGCCCGCT TCGATCCTCC CGCCATCGGT 
CGCTTTGATT ACCTCATCGA GGCCTGGAGC GATGACTGGG CGGGCTGGCG CCACGATACC 
CTGATCAAAC GCGACGCCGG GCTTGATCTT TCGCTGGAGG TCCTGGAGGG CATGGCCTTG 
ATCGAGGCGA CGATCGCCCG CATCGACGGC ACGGACCAAG CCGCCGATCA AGGCTTGCTG 
AGCTCTTGGC TGGCCGATGC CCAAGGGCTG GAAACGGCCG GCGGCCGGGC GACCCTGATG 
CTGTCGGAGA CCCTTGACGC GGTGATGGCC CGCCATCCCG ATCGCTCCGG GGCGGTGCGC 
TCGGGCCCGC CCTTGTCGGT GGTCGTCGAT CCGCCGCGCG CCGGCTTCGC CGCTTGGTAT 
GAGATGGCGC CGCGCTCCCA GGCCAGCGAG CCCGGGCGCT GGGGGACCTT CGCCGATTGC 
GCCGCCCGCC TGCCCGATAT TCGCGCCATG GGCTTTGACA CCTTGTATCT GATGCCCATC 
CATCCGATCG GTCGCATCCA CCGCAAGGGC CCCAACAACA GCCTGAAGGC GGGGCCCGAC 
GATCCGGGCA GTCCCTATGC CATCGGCGCG GCCGAGGGCG GCCATACCGC CATCCACCCC 
GAATTGGGAA CGCTCGATGA GTTTCGCGCC CTGGTCGCCC AGGCCGGGGA AATGGGCATG 
GATGTGGCCC TTGATATCGC CATCCAATGC GCCCCCGACC ACCCCTGGGT GAGCGAGCAT 
CCCGAGTGGT TCGAATTTCG GCCCGACGGC ACCATCAAAT ATGCCGAAAA CCCGCCCAAG 
AAATATCAAG ACATCGTCAA TCTCGCCTTC TGGGGACCCC ACCGCCAAGA GCTGTGGCTG 
GCCCTGCTTG AGGTTTTCAC CTTCTGGGCC GAGCAGGGCG TGCGCGTCTT CCGCGTCGAC 
AATCCCCACA CCAAACCGGT GCCGTTCTGG GAATGGCTGA TCGCCACGGT GAAGGCCCGC 
TATCCCGACT GCATTTTTCT GGCCGAGGCC TTTACCCGGC CGCCGATGAT GAAAATGCTG 
GCCAAGATCG GCTTCACCCA ATCCTACAGC TATTTCACCT GGAGGACGAC CAAGGCCGAG 
CTGACCAGCT ATATGGAAGA GCTGGTCGAG GATGATCCCG CCGATTACAT GCGGGTCAAT 
TTCTTCGCCA ATACCCCCGA TATCTTGCCC TTTCACCTGC AGACCGGCGG TCGGCCGGCC 
TTCATGCAGC GCCTTGTTCT CGCCGCCACG CTGTCAAGCG TCTATGGCAT CCATAACGGC 
TTCGAGCTGT GCGAGAACGC GGCGATCCCG GGCAAGGAGG AATACGCCGA CAGCGAGAAG 
TATGACTTCA AGCCCCGCGA CTGGAACGCC GAGGGCAACA TCAAGGATCT GATCGCCAAG 
GTGAACTGGA TCCGCAACGA AAACCCGGCC CTGCAAGCCT TTCGGACCCT GCGGTTTTTC 
CGCGCCGACA ACGACCAGAT CCTGTTCTAC GGCAAGATGA CCGGGGATCG GGCCAATATC 
ATCCTCGTGG CCGTCAATCT TGATCCCCAT GCCGGCCAGG GCGGGCTGCT GTGGTTGCCG 
CTGGCCGAAA TGGGCCTCAG CGATGGACAG CCCTTCATTG TCGAAGAGTT GCTGTCGGGA 
ACCCGGCTGG AATGGACGGG CAGCCCCCAT CACTACTGGT TCGATCCGGC GACCAACCCC 
GCCGCCATCT TTCGCATCAC CCCCTGA 

 

Protein sequence

MSSALPPFRP SLVSDPLSAR QDPSLPGILP VSAPILIEDI GPRVSDGRYP IKRVLGEGVV 
VSAAVFRDGH VPLAAALLWR RSPRPGEPAG GRGAWHEVPL TQIEPGLARW RARFDPPAIG 
RFDYLIEAWS DDWAGWRHDT LIKRDAGLDL SLEVLEGMAL IEATIARIDG TDQAADQGLL 
SSWLADAQGL ETAGGRATLM LSETLDAVMA RHPDRSGAVR SGPPLSVVVD PPRAGFAAWY 
EMAPRSQASE PGRWGTFADC AARLPDIRAM GFDTLYLMPI HPIGRIHRKG PNNSLKAGPD 
DPGSPYAIGA AEGGHTAIHP ELGTLDEFRA LVAQAGEMGM DVALDIAIQC APDHPWVSEH 
PEWFEFRPDG TIKYAENPPK KYQDIVNLAF WGPHRQELWL ALLEVFTFWA EQGVRVFRVD 
NPHTKPVPFW EWLIATVKAR YPDCIFLAEA FTRPPMMKML AKIGFTQSYS YFTWRTTKAE 
LTSYMEELVE DDPADYMRVN FFANTPDILP FHLQTGGRPA FMQRLVLAAT LSSVYGIHNG 
FELCENAAIP GKEEYADSEK YDFKPRDWNA EGNIKDLIAK VNWIRNENPA LQAFRTLRFF 
RADNDQILFY GKMTGDRANI ILVAVNLDPH AGQGGLLWLP LAEMGLSDGQ PFIVEELLSG 
TRLEWTGSPH HYWFDPATNP AAIFRITP