| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4347 |
|---|
| Symbol | |
|---|
| ID | 6285943 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010678 |
|---|
| Strand | + |
|---|
| Start bp | 649516 |
|---|
| End bp | 651111 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642618828 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001892869 |
|---|
| Protein GI | 187926524 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3889] Predicted solute binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.165019 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCTC TTCGCAGCGT TGTCGGGGCT GCTCTGCGCT GGTGCGGTCA CGTTGGGCTT
TGGCTCTTGA AGCGTGTTCT CTTCGTGGTG GCGGTGGTGA CTGCGCTCGG TTTGCTTGGG
CGTAGTGCTC ACGCTGCAGG TTGTACGGTG CCCGGGCAGA TGTGTATTCA GGGCAATAGC
ATGGGTGTCG ACGTGTCAGT GCGGCAGAGC GGCAATGGCA CTCCTCAGAC GCCCTCTGCT
GGTGTCATGA ATGTGCTGGT GCCCATCACT GTCGGCGTGG TTGCTGTGGG TGCTGCGGCT
GTGGCGATCC CTGCGGTTGG AGGGATTGCG ATTGCGGGTG ATGCGATGGC CAGCGTAGGC
ATGACTGCGA TTCGCGGCGG CATTATTGGA GGTGTTGCCC TTACTTCCCT GCTCAACTAT
CTGGGTGGCG ATATGGTTAT GGGTCCGGAT GGCAAGGTTA GTAAGGCGCA GCACAATGCC
AGTCAGGGCG ATAGCGGTTT TGATGGTGCT CTCTGGATTT CTGGCAATAA GACCGGTGAT
TCTCCGGTTG CTGCGTGCAG CGCTTATGTT GCTGTTGCGT ATCCGGGTAT GAGCATCACT
GGGTATGGCG GTAACGGTTA TTGTCAAGGC ACGCTGCCTC CCGGTTCGTC GATGTCTTGC
GGTGGCGGTG TCTGCAATAT TCAGGTCGGC CATGCTGGTG GTTGCGTGTC TGGCTACGTC
GCGTCTGGCT CTGGTTGTGC GGTTGATCCT TCCTCTCCCG TGACGTATGC GCCGGCGAGT
GATGCTGATA TTCAGAGTGC TATCAGTTCT CATCCGGCTA GCTGGCCGTC GATCTACAAC
GATATGAACT GTGGGCCGAC GCTTGCGCTG ACGAATGGGT CAACGTCTGA CCCGTGCTAC
GGCTTGTACA GCGATTCGCG TACCGGCTTC GGCGTGTCTT TCTCCACTGG CGGTTCGTCT
TGGACCAACA ACGGTTGCGC CGTGAATAGC ACGTCCTGCC CTTCGGCCAC GGTGACGACT
GCACCTACCA CCGACTCGTC TACCAAGACC AACGCGGATG GCAGCAAGAC CACCACGACG
AACACCACCA CCAAGACCAC AACGGTGACC GGCACGAATG ACCGGACGAA CCCTGTCGAG
GCGCAAACGA CCACGACAAC GCAAACGTCC ACGACCGTGA CCAACCCGGA CGGCAGCACG
ACCACCACGA CCACGACCAC AACGGATCAG GCGTCGCCTG CCACGGCGGG CAATGCCAAT
CAACAGCAGA AGGATCAAAC GCCGGCGACA ACGGCGACCT TTGCTGGTGG CGACTGGAAG
CTTTACACCC CCAAAGAAAA GACGATGGCG CAGGTTATGC AGGCCTTCGT GAGTCGAGTA
CAGGCGATGC CTTGGTACAC CGTGATGAGC AATTTCTTCA CGGTCAACGT GAGCGGTTCT
TGCCCGCATT GGGTGGTCCC GGCAAGTCGA TACACGCCGC CGCTCGACGG TACGCAGTTC
TTCTGCGCAT CGTGGGCGAT GAGTCTTTAC GCGCTGGGCG GCGTGGTGAC GATGCTCGTC
GCTGCTTGGT ACGCATGGCG TATCGCGTTT CTCTGA
|
|---|
| Protein sequence | MDALRSVVGA ALRWCGHVGL WLLKRVLFVV AVVTALGLLG RSAHAAGCTV PGQMCIQGNS
MGVDVSVRQS GNGTPQTPSA GVMNVLVPIT VGVVAVGAAA VAIPAVGGIA IAGDAMASVG
MTAIRGGIIG GVALTSLLNY LGGDMVMGPD GKVSKAQHNA SQGDSGFDGA LWISGNKTGD
SPVAACSAYV AVAYPGMSIT GYGGNGYCQG TLPPGSSMSC GGGVCNIQVG HAGGCVSGYV
ASGSGCAVDP SSPVTYAPAS DADIQSAISS HPASWPSIYN DMNCGPTLAL TNGSTSDPCY
GLYSDSRTGF GVSFSTGGSS WTNNGCAVNS TSCPSATVTT APTTDSSTKT NADGSKTTTT
NTTTKTTTVT GTNDRTNPVE AQTTTTTQTS TTVTNPDGST TTTTTTTTDQ ASPATAGNAN
QQQKDQTPAT TATFAGGDWK LYTPKEKTMA QVMQAFVSRV QAMPWYTVMS NFFTVNVSGS
CPHWVVPASR YTPPLDGTQF FCASWAMSLY ALGGVVTMLV AAWYAWRIAF L
|
|---|
| |