Gene Rpic_4175 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_4175 
Symbol 
ID6285600 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010678 
Strand
Start bp447541 
End bp448956 
Gene Length1416 bp 
Protein Length471 aa 
Translation table11 
GC content67% 
IMG OID642618660 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_001892701 
Protein GI187926356 
COG category[T] Signal transduction mechanisms 
COG ID[COG2200] FOG: EAL domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCGCG CAAGGTCTGC CGCGCCATCG AGTCTGGATC CCATCTCCGG ATTGCCCGAC 
CGCGGGCGAT TCGTCCAACT GCTGGCTGCC ATGCCTCAGC CCGCACGCCA GGATGCAATC
GGCGCCCTGC TGCTGATCGG CTTCGACCAT TTTGCCGAGG CGACCAACAC GCTCGGGCCC
TTGGCAGCAC GGGAGGTCAT CGCCGAATGT GCATCGCGGC TTGAGGCACT GAGCGTGCCC
GCCGCGGATG GCAACGCACC CATCGTCGGG CGCATCGGCC CCGAGACTTT TGCCGTTGCC
TGCGCAGACT TCGTCTCGGC ACAGGATGTA CACGATCTGG CGCGGCGGAT TTCTGCGGCA
CTCACGCGAC CTTTCATCAC GCATGGTTAC GAGCTGGTCT GCTCTTGCAG TATCGGCATG
ACGCTTTTCG AGGGCATGCC CTCCGATGCG GCACGGCTGA TTGAACAGGC CGACCGGGCG
CTCTATGGTG TTCAGCACGG TGCCGAACCC AGCCCCGCGC TGTATGCCCC GGCGGCCATG
CCCCCAGGCA CGGGCACCAA CGTCGCCCGC GCCGACGGAT ACGACGCCAT CGCCGAGCAC
CCGCGCCTGG CCGCCCAACT GCGCCACGCG CTTGCACGCC GCCAGTTCAG CCTGAACCTG
CAGCCACAAC TGAGCCTGAC CGACGGACGG ATCGTCGGCT ACGAATTCTT GCTGCGCTGG
AGCTCACCCG AGCTGGGAGG CGTGGCACCG GCGGAATTTC TGCCGATCCT GGAGCAGACC
GGCGACATTC GCGAGGTTGG CCACTGGGTG CTCGACAGCG CCGCCCAGAT GCTGGCCGGA
CTGCTGCGCG AAGAATCCGA GCGCGCAGGA CGCAACAGCC GGCATCAGCC GGGCGTGCAT
GCAGCCGTCA ACCTGTCGGT TGCGCAGCTG CTCGATCCGC AATTGAGCGA CGTCGTGCGC
GACATTGCCG CGCGCCACGC GGTGCCGACC ACCCGGCTTG TCTTCGAGAT ATCGGAACAC
ACGCTGCACC GTGCCAACGG CTCGGCGCAG AAAGCGGTGG AAGCCCTGCA CGCGTGCGGC
GCGCGCGTGG CGGTGGAAGA CTTTGGAGCC ACCGCGCACA GCCTCGATTG CCTGGCAACG
TTCCGGCCCG ATCAGGTCAA GCTCGACCAG GCGATCGTCA ACGCAGTGAC CAACGCGAGC
GATCACGCGG TGCTGCAACG CCTGGTGACT GCCGCGCATG GTGCGGGCGT GCCCGTCATC
GCCACGCGCG TGGAAACCGC CGCACAGCTC CATGCCTTGC GGGCCTGCCG GTGCGACGTG
ATCCAGGGCT ATTTGCTCTC GCAACCGTTT CCTGCCCGCT GGATCGACGA CACACAAGAC
GTGATTGCCG AGCGGGCGCG CGATCTGATG CCGTAA
 
Protein sequence
MSRARSAAPS SLDPISGLPD RGRFVQLLAA MPQPARQDAI GALLLIGFDH FAEATNTLGP 
LAAREVIAEC ASRLEALSVP AADGNAPIVG RIGPETFAVA CADFVSAQDV HDLARRISAA
LTRPFITHGY ELVCSCSIGM TLFEGMPSDA ARLIEQADRA LYGVQHGAEP SPALYAPAAM
PPGTGTNVAR ADGYDAIAEH PRLAAQLRHA LARRQFSLNL QPQLSLTDGR IVGYEFLLRW
SSPELGGVAP AEFLPILEQT GDIREVGHWV LDSAAQMLAG LLREESERAG RNSRHQPGVH
AAVNLSVAQL LDPQLSDVVR DIAARHAVPT TRLVFEISEH TLHRANGSAQ KAVEALHACG
ARVAVEDFGA TAHSLDCLAT FRPDQVKLDQ AIVNAVTNAS DHAVLQRLVT AAHGAGVPVI
ATRVETAAQL HALRACRCDV IQGYLLSQPF PARWIDDTQD VIAERARDLM P