Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_4175 |
Symbol | |
ID | 6285600 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010678 |
Strand | - |
Start bp | 447541 |
End bp | 448956 |
Gene Length | 1416 bp |
Protein Length | 471 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642618660 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_001892701 |
Protein GI | 187926356 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCGCG CAAGGTCTGC CGCGCCATCG AGTCTGGATC CCATCTCCGG ATTGCCCGAC CGCGGGCGAT TCGTCCAACT GCTGGCTGCC ATGCCTCAGC CCGCACGCCA GGATGCAATC GGCGCCCTGC TGCTGATCGG CTTCGACCAT TTTGCCGAGG CGACCAACAC GCTCGGGCCC TTGGCAGCAC GGGAGGTCAT CGCCGAATGT GCATCGCGGC TTGAGGCACT GAGCGTGCCC GCCGCGGATG GCAACGCACC CATCGTCGGG CGCATCGGCC CCGAGACTTT TGCCGTTGCC TGCGCAGACT TCGTCTCGGC ACAGGATGTA CACGATCTGG CGCGGCGGAT TTCTGCGGCA CTCACGCGAC CTTTCATCAC GCATGGTTAC GAGCTGGTCT GCTCTTGCAG TATCGGCATG ACGCTTTTCG AGGGCATGCC CTCCGATGCG GCACGGCTGA TTGAACAGGC CGACCGGGCG CTCTATGGTG TTCAGCACGG TGCCGAACCC AGCCCCGCGC TGTATGCCCC GGCGGCCATG CCCCCAGGCA CGGGCACCAA CGTCGCCCGC GCCGACGGAT ACGACGCCAT CGCCGAGCAC CCGCGCCTGG CCGCCCAACT GCGCCACGCG CTTGCACGCC GCCAGTTCAG CCTGAACCTG CAGCCACAAC TGAGCCTGAC CGACGGACGG ATCGTCGGCT ACGAATTCTT GCTGCGCTGG AGCTCACCCG AGCTGGGAGG CGTGGCACCG GCGGAATTTC TGCCGATCCT GGAGCAGACC GGCGACATTC GCGAGGTTGG CCACTGGGTG CTCGACAGCG CCGCCCAGAT GCTGGCCGGA CTGCTGCGCG AAGAATCCGA GCGCGCAGGA CGCAACAGCC GGCATCAGCC GGGCGTGCAT GCAGCCGTCA ACCTGTCGGT TGCGCAGCTG CTCGATCCGC AATTGAGCGA CGTCGTGCGC GACATTGCCG CGCGCCACGC GGTGCCGACC ACCCGGCTTG TCTTCGAGAT ATCGGAACAC ACGCTGCACC GTGCCAACGG CTCGGCGCAG AAAGCGGTGG AAGCCCTGCA CGCGTGCGGC GCGCGCGTGG CGGTGGAAGA CTTTGGAGCC ACCGCGCACA GCCTCGATTG CCTGGCAACG TTCCGGCCCG ATCAGGTCAA GCTCGACCAG GCGATCGTCA ACGCAGTGAC CAACGCGAGC GATCACGCGG TGCTGCAACG CCTGGTGACT GCCGCGCATG GTGCGGGCGT GCCCGTCATC GCCACGCGCG TGGAAACCGC CGCACAGCTC CATGCCTTGC GGGCCTGCCG GTGCGACGTG ATCCAGGGCT ATTTGCTCTC GCAACCGTTT CCTGCCCGCT GGATCGACGA CACACAAGAC GTGATTGCCG AGCGGGCGCG CGATCTGATG CCGTAA
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Protein sequence | MSRARSAAPS SLDPISGLPD RGRFVQLLAA MPQPARQDAI GALLLIGFDH FAEATNTLGP LAAREVIAEC ASRLEALSVP AADGNAPIVG RIGPETFAVA CADFVSAQDV HDLARRISAA LTRPFITHGY ELVCSCSIGM TLFEGMPSDA ARLIEQADRA LYGVQHGAEP SPALYAPAAM PPGTGTNVAR ADGYDAIAEH PRLAAQLRHA LARRQFSLNL QPQLSLTDGR IVGYEFLLRW SSPELGGVAP AEFLPILEQT GDIREVGHWV LDSAAQMLAG LLREESERAG RNSRHQPGVH AAVNLSVAQL LDPQLSDVVR DIAARHAVPT TRLVFEISEH TLHRANGSAQ KAVEALHACG ARVAVEDFGA TAHSLDCLAT FRPDQVKLDQ AIVNAVTNAS DHAVLQRLVT AAHGAGVPVI ATRVETAAQL HALRACRCDV IQGYLLSQPF PARWIDDTQD VIAERARDLM P
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