Gene Rpic_3700 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3700 
Symbol 
ID6286871 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp3879489 
End bp3881015 
Gene Length1527 bp 
Protein Length508 aa 
Translation table11 
GC content65% 
IMG OID642627284 
ProductBerberine/berberine domain protein 
Protein accessionYP_001901250 
Protein GI187930763 
COG category[C] Energy production and conversion 
COG ID[COG0277] FAD/FMN-containing dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACTGG ATGTGACGCG CCAAGACCCT CGCTACAACA CGCTCAAACA TGGCTTCAAC 
CTGCGCTGGC CCACAACGGA TGCACAGGCC GCCAGCCGCA TCGCCCTCAT AGAAAAGCCC
GACGATGTGG CGCCCGCCGT GCAGCGCATC ATCAACGCGG GCCAACGCCC GACGGTGCGC
AGCGGCGGGC ATTGCTATGA GGATTTCGTC TCCAACAACC CCGACGGCAC GATCGTCGAT
CTGAGCCTGC TCGCTACGCC CGAGGTGCAC GCCGACGGCA CGGTGCGCAT TCCGGCCGGT
ACGCAGAACT GGAACGGTTA CCTGGAACTG TACAAACGCC ACAACGTGAC GCTGCCCGGC
GGCTCGTGCT ATTCGGTGGG CGCGGGCGGG CATATTTGCG GCGGCGGGTA TGGACTGCTC
TCACGGCTGC AAGGGCTGAC GGTGGATTGG CTCTCGGCCG TTGACATCGT CACGGTGGAC
AAGACCGGCA AGACGGCTGC CCGCACGGTG GATGCAGCGC ACGATCCCGA TCTGTTCCGT
GCGTGCCGCG GTGCGGGCGG CGGCAACTTC GGCGTCATCA CCGGCTACAC GTTCGCCAAG
CTGCCCACGG CACCGCAGGA AGTCGCGCTC GCCACCGTGG CCTTCGACTG GGCCACCATG
ACGCCGCAGC GCTTTGCAGA ACTGCTGCGC ATCTACGGCG AATACTGGGA CACGCGCGGC
AAGGACCCTG ACACGTGGGG CATGTTTTCG CTGCTCAAGC TCACGCACAA ATCGTCGGGG
CAGATCGTCC TGCTCACACA GTTCTGCAAC CCCGACGGCA CGTGCCGCGA TCTCTCTGTC
CTCAATGATT TTCTGAACCG CTTCCAGGCC TGCGCGCCCA CGCCGGTCAA AGGGCGCCCG
CCCGGCTACG GCCCCGCGCA CAAACAGGGC GTGGGGCAGC TGCTCTGCTC CAAGCCGCAC
ACCATCGTGC AGTACGACTG GCTGACGGCC ACGCAGTATC TGAACGGTTC GGGTGCCAAT
CAGCGTGGCA AGTACAAATC GGCCTACATG AAGCGCGGCT TCACGGCGCG CGAGGCGCAG
CGCATCTACA CCCACCTCAC GCGGACGATG CCGGGCGTCG ATCTGAGCCA GTCGCTGCTG
CAAGTCGATT CGTACGGCGG CGCCGTCAAC AAGGCGGAGC GCATTGGCGA TACGGCCGTG
CCGCAACGCT CTTCCATCAT GAAGCTGCAG TACCAGACGT ATTGGGCCGC GCCTGCCGAT
GACGCCGGCC ACCTGCGCTG GATCAGCGAT TTCTACCGTG ACGTCTACGG CGCCCCCGAC
GTGCCCGCGC CGCACAGCGG CACGCCGTAC CCCGGCGACC GGTACGAGGG CTGCTACATC
AACTACCCCG ACGTCGACAT GCTCGCCTAC CCGTTCTGGC CGCAGCTCTA CTACGGCAGC
GGCGACCTGT ACGCGTTTCT GCAGGACGTG AAGCGCCGGT ATGATCCGAA CAACATCTTC
CACCACGCGA TGTCCGTGCG TGTTTGA
 
Protein sequence
MTLDVTRQDP RYNTLKHGFN LRWPTTDAQA ASRIALIEKP DDVAPAVQRI INAGQRPTVR 
SGGHCYEDFV SNNPDGTIVD LSLLATPEVH ADGTVRIPAG TQNWNGYLEL YKRHNVTLPG
GSCYSVGAGG HICGGGYGLL SRLQGLTVDW LSAVDIVTVD KTGKTAARTV DAAHDPDLFR
ACRGAGGGNF GVITGYTFAK LPTAPQEVAL ATVAFDWATM TPQRFAELLR IYGEYWDTRG
KDPDTWGMFS LLKLTHKSSG QIVLLTQFCN PDGTCRDLSV LNDFLNRFQA CAPTPVKGRP
PGYGPAHKQG VGQLLCSKPH TIVQYDWLTA TQYLNGSGAN QRGKYKSAYM KRGFTAREAQ
RIYTHLTRTM PGVDLSQSLL QVDSYGGAVN KAERIGDTAV PQRSSIMKLQ YQTYWAAPAD
DAGHLRWISD FYRDVYGAPD VPAPHSGTPY PGDRYEGCYI NYPDVDMLAY PFWPQLYYGS
GDLYAFLQDV KRRYDPNNIF HHAMSVRV