| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3700 |
|---|
| Symbol | |
|---|
| ID | 6286871 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 3879489 |
|---|
| End bp | 3881015 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642627284 |
|---|
| Product | Berberine/berberine domain protein |
|---|
| Protein accession | YP_001901250 |
|---|
| Protein GI | 187930763 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACTGG ATGTGACGCG CCAAGACCCT CGCTACAACA CGCTCAAACA TGGCTTCAAC
CTGCGCTGGC CCACAACGGA TGCACAGGCC GCCAGCCGCA TCGCCCTCAT AGAAAAGCCC
GACGATGTGG CGCCCGCCGT GCAGCGCATC ATCAACGCGG GCCAACGCCC GACGGTGCGC
AGCGGCGGGC ATTGCTATGA GGATTTCGTC TCCAACAACC CCGACGGCAC GATCGTCGAT
CTGAGCCTGC TCGCTACGCC CGAGGTGCAC GCCGACGGCA CGGTGCGCAT TCCGGCCGGT
ACGCAGAACT GGAACGGTTA CCTGGAACTG TACAAACGCC ACAACGTGAC GCTGCCCGGC
GGCTCGTGCT ATTCGGTGGG CGCGGGCGGG CATATTTGCG GCGGCGGGTA TGGACTGCTC
TCACGGCTGC AAGGGCTGAC GGTGGATTGG CTCTCGGCCG TTGACATCGT CACGGTGGAC
AAGACCGGCA AGACGGCTGC CCGCACGGTG GATGCAGCGC ACGATCCCGA TCTGTTCCGT
GCGTGCCGCG GTGCGGGCGG CGGCAACTTC GGCGTCATCA CCGGCTACAC GTTCGCCAAG
CTGCCCACGG CACCGCAGGA AGTCGCGCTC GCCACCGTGG CCTTCGACTG GGCCACCATG
ACGCCGCAGC GCTTTGCAGA ACTGCTGCGC ATCTACGGCG AATACTGGGA CACGCGCGGC
AAGGACCCTG ACACGTGGGG CATGTTTTCG CTGCTCAAGC TCACGCACAA ATCGTCGGGG
CAGATCGTCC TGCTCACACA GTTCTGCAAC CCCGACGGCA CGTGCCGCGA TCTCTCTGTC
CTCAATGATT TTCTGAACCG CTTCCAGGCC TGCGCGCCCA CGCCGGTCAA AGGGCGCCCG
CCCGGCTACG GCCCCGCGCA CAAACAGGGC GTGGGGCAGC TGCTCTGCTC CAAGCCGCAC
ACCATCGTGC AGTACGACTG GCTGACGGCC ACGCAGTATC TGAACGGTTC GGGTGCCAAT
CAGCGTGGCA AGTACAAATC GGCCTACATG AAGCGCGGCT TCACGGCGCG CGAGGCGCAG
CGCATCTACA CCCACCTCAC GCGGACGATG CCGGGCGTCG ATCTGAGCCA GTCGCTGCTG
CAAGTCGATT CGTACGGCGG CGCCGTCAAC AAGGCGGAGC GCATTGGCGA TACGGCCGTG
CCGCAACGCT CTTCCATCAT GAAGCTGCAG TACCAGACGT ATTGGGCCGC GCCTGCCGAT
GACGCCGGCC ACCTGCGCTG GATCAGCGAT TTCTACCGTG ACGTCTACGG CGCCCCCGAC
GTGCCCGCGC CGCACAGCGG CACGCCGTAC CCCGGCGACC GGTACGAGGG CTGCTACATC
AACTACCCCG ACGTCGACAT GCTCGCCTAC CCGTTCTGGC CGCAGCTCTA CTACGGCAGC
GGCGACCTGT ACGCGTTTCT GCAGGACGTG AAGCGCCGGT ATGATCCGAA CAACATCTTC
CACCACGCGA TGTCCGTGCG TGTTTGA
|
|---|
| Protein sequence | MTLDVTRQDP RYNTLKHGFN LRWPTTDAQA ASRIALIEKP DDVAPAVQRI INAGQRPTVR
SGGHCYEDFV SNNPDGTIVD LSLLATPEVH ADGTVRIPAG TQNWNGYLEL YKRHNVTLPG
GSCYSVGAGG HICGGGYGLL SRLQGLTVDW LSAVDIVTVD KTGKTAARTV DAAHDPDLFR
ACRGAGGGNF GVITGYTFAK LPTAPQEVAL ATVAFDWATM TPQRFAELLR IYGEYWDTRG
KDPDTWGMFS LLKLTHKSSG QIVLLTQFCN PDGTCRDLSV LNDFLNRFQA CAPTPVKGRP
PGYGPAHKQG VGQLLCSKPH TIVQYDWLTA TQYLNGSGAN QRGKYKSAYM KRGFTAREAQ
RIYTHLTRTM PGVDLSQSLL QVDSYGGAVN KAERIGDTAV PQRSSIMKLQ YQTYWAAPAD
DAGHLRWISD FYRDVYGAPD VPAPHSGTPY PGDRYEGCYI NYPDVDMLAY PFWPQLYYGS
GDLYAFLQDV KRRYDPNNIF HHAMSVRV
|
|---|
| |