| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3103 |
|---|
| Symbol | |
|---|
| ID | 6289313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 3241859 |
|---|
| End bp | 3242476 |
|---|
| Gene Length | 618 bp |
|---|
| Protein Length | 205 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642626674 |
|---|
| Product | channel protein, hemolysin III family |
|---|
| Protein accession | YP_001900658 |
|---|
| Protein GI | 187930171 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
|---|
| TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATCGCG GAGAACGTTT CAACGGCTTC AGCCACTTGG CCGGGGCCAT CCTTGCCGCT
ACCGGCATGG CTGTGCTCGT GACATCCTCG GCGCTGCACC ACGATGCCTG GAAGGTGGTC
AGTTCGGTCG TCTACGGCAC CACGCTGGTC CTGCTCTACA CAATTTCCAC GCTGTATCAC
AGCCTGCGCG GCCCCGCCAA AAGCCTCTTC CAACGGCTGG ACTATTGCGC CATCTACCTG
CTGATCGCCG GCAGCTACAC GCCGTTTGCG CTGGTCACGC TGCGCGGCCC CTGGGGCTGG
GCGCTGTTCG GCATCAACTG GGCACTGGCC GCCATTGGCA TTGCGCAGGA ACTCTGGATC
GGCCGCCGCA CGCGCCTGTT CTCACTGCTG ATCTACGTGG TGATGGGCTG GCTGGTGCTG
ATTGCCATGG GGCCGCTGGC CACCGCGCTG CCTGCACCCG GCCTGTGGTG GCTGGTAGCC
GGTGGCGCGC TTTATACGAC GGGCATCGGC TTTTTTCTCT TTGACGAGAA GGTGCGGCAC
TTCCACGGCA TCTGGCACCT GTTCGTGCTG GCGGGCAGTG CGTGTCAGTT CGTCAGCATC
CTGCTGTACG TCGGCTGA
|
|---|
| Protein sequence | MYRGERFNGF SHLAGAILAA TGMAVLVTSS ALHHDAWKVV SSVVYGTTLV LLYTISTLYH
SLRGPAKSLF QRLDYCAIYL LIAGSYTPFA LVTLRGPWGW ALFGINWALA AIGIAQELWI
GRRTRLFSLL IYVVMGWLVL IAMGPLATAL PAPGLWWLVA GGALYTTGIG FFLFDEKVRH
FHGIWHLFVL AGSACQFVSI LLYVG
|
|---|
| |