| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3024 |
|---|
| Symbol | |
|---|
| ID | 6288413 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 3152952 |
|---|
| End bp | 3153530 |
|---|
| Gene Length | 579 bp |
|---|
| Protein Length | 192 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642626594 |
|---|
| Product | Chorismate lyase |
|---|
| Protein accession | YP_001900579 |
|---|
| Protein GI | 187930092 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG3161] 4-hydroxybenzoate synthetase (chorismate lyase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATT TCCCGTCGTA CCCGCGGGGC CTCTGGCGCA GCGCGTTGCC TCCGGCAGTG
GTCTATGACC GGCACTGGGC GCGCTGGGCC GTAGGCGCCG ATTCGCTGAC GGCCAGGCTT
CGTGCGGCAT CGTCGCGCTT TCGCGTGCAA TTGCTCGGCC AGCGGCGCGC GATGCCGTTG
CGTGACGAGT GGCGTTGTCT TGGCATGTCG GGCCCTGCTG AGACGCTGGT CCGCGAAGTC
CTGCTGATCT GCGACGAGAT CCCGGTGGTC TATGCACACA CGATCGTGCA TCCGCGCAGT
GTGGCGCTCG ACTGGCCGTT CCTGAAAGCG CTGGGGACGC AGCCGCTGGG CCACTCGCTG
TTTGCCGATC CGCGTGTCGA GCGCGGTGGT TTCGAATTCG CCTTGCTGGA CGCGCGCCAC
CCGCTGGTGC GCCGCGCGCA TGACGCGCTA GGCGATGCGC CTGTTGTCGG CACCGCCCGG
CTGCCAGCCC GCCGGTCGGT CTTCCGGCGC GGAGCGAGCG CGATGCTGGT AACGGAGGTT
TTCCTACCTG CGCTGGCTCG CTTCCAACCT CCGCGGTAA
|
|---|
| Protein sequence | MTDFPSYPRG LWRSALPPAV VYDRHWARWA VGADSLTARL RAASSRFRVQ LLGQRRAMPL
RDEWRCLGMS GPAETLVREV LLICDEIPVV YAHTIVHPRS VALDWPFLKA LGTQPLGHSL
FADPRVERGG FEFALLDARH PLVRRAHDAL GDAPVVGTAR LPARRSVFRR GASAMLVTEV
FLPALARFQP PR
|
|---|
| |